Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5078 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGCGCAGAAGAGATGGATTTGACAGATCAGCAATTGAAACCTTGTCGATGTGGTTATGAGATCTGTGTCTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGATACCGATGGGCGATGCCCTGCTTGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGACGGCGTCAAAGTGTGAAAGATTGCTGAATGAAATAAATATGGAGAAAAAGGTGAAGAACCAGAAAGCAAAATCTAAATCTTCTGATGGACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTGCCTCTGGATCTGGCCGATGAAGATCTTCTCCAGAAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCGCGGACGGCAGCTGGTGTCATTCAACAGTTTCCTAATGATACTTGCAGTGTATATATTACTTATTTAAAGGAAGAGGAAGCAATTCGGTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAAACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATTCGCCTTGCATAAACCCTGATTGTCTATATCTGCATGAGGTTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATATCAGCTTACACTAGAAGTAGAGTTCAACAAATTACTGGTGCCACAACTAATATGCAACGGCGGTCGGGGAATGTATTACCTCCTCCTCTGGATGATTGCACAGATAATTCGACAGAAAGGCCCATTATTAAAAGTGCTCCAACTCAGAACTCTGTCTACACAGTGCGAAGTTCGCCTCCAAATGGAATCAATGGGAGACATGTACCTCTTCCCACTAGTACTGCATGGGGTACACAGGCTACAAGTTGTCAGTCCCCTGTTGGAGGTCTATCGCACCCATCTGTTTTATCCAAGCCAAAGCCTGATACAGTTAATAGCACGCTTGCCTTTTCTACTGCTGTTACGGGAACAATTCAGGCTTCTGCAGCACAGGGTGATGGTTCAAGGAGGCCACCATCAAGTGATGGGAGTCGTAATACATTACCTAGGGTGAAAAGTGAATTACCAAAACCTATTAAACAATATAACATGGACAGTCTGGCCAGTGCAAGTGAAAAAATTTCAGCTTGTGCTGTTTCTGCTGCACCTGTCAATTTGAAGAGTGAGCTGTCTTCTCGACCATTGTCACAAGATAATGATCGAGGCAACTGTACAGCAAACACATTAAATTCTAATAACATTAATGGACATTCTTTTAACTCTGGTCCCGAGGAAGCAGTGCCTGCTACCAATGAAGTGATTCGGAATTTGTCCAGTGAGTTCTCCTCAATTAACATTGGTAGAAGTACCTCAATTGAAAACTATGGTATGACCAAACCTAGTAGCCGGCCTACTGATCACGTCTTGACTAAATCTCCTCGAATTCAAGAAGGATCACAATATGACGTTGACAGATTTAAAGACCCAATAACAAATGTGGTTGGTAAAACTTCCACATCAGATAGTGGGATTTTTAGTCCAAAGGAACAGTGTGGAGGGATATTGAACTCTCAATCTCAACTAGTATCAGATACAGCTGATATCGAAGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCGTTCTTATTTGCCTAAGGCAACAAATTTCCTTAATGTATCAAAACTTTCTAGCCCTTGTCTAATGCCGCATGGCGAACCTTGTACTGCTGGAAATGCTGATTCTCTATATTCTGATGATAGAGTTCGGGATGAATCTATTTTACATTCGTCTAGCATGCTATGTAATGGCTATCCTGAGAAATTGATCAGTGGCACCTCTAATGGTTTGCTTCATGATGAAAGAAACAGGCAAAGCATTGGAAGGTTGGTTGGTGATGCAGTTAATACTGGGTGTGACGTGGCAATTGATAAGGGCGAAAGTAGTATAATCTCAAATATCCTGTCCATTGATTTTGATCCCTGGGATGACTCCATAACATCACCTCATAATATAGTGAAATTGTTGAGTGACAATACTGATAGCCAACCCGGTCCTTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAATAATAACCAGTCAAGGTTCTCTTTTGCAAGGCAGGAAGAATCTGAAATTCAAACTTTTGATGTGCATCCGTCTTATGCTTTCAGCCAGCAACAGCCTAAGAGCCACGCACTCAATCAGAGTCTGGCAGAAAGAGACTTTTATATGGAAAAGTTGGGTATTGCAAATGGCTTTCCTACCAGTAACTTTGAGGAAGCTGAAAATATAAGCAATGCCCATTCAATAGCTTCTTCCAATAAGCTTTCTGCTATTTCAAGAGCACAAGTTTCAGCTCCACCAGGTTTTTCAATTCCAAGCAGGCTCCCACCTCCTGGTTTTTCTTCACATGAGAGATCAGAGCAGACTCTTGACTCCCTATCTGGTAATTCCTTACTTGATCATTCTCCTTTTTTGAGAAATTCACATCAGACATTCTCAGCTGGAAGTATTGGTGGCACGGGCGACATAGAATTTATGGATCCAGCTATTCTGGCAGTTGTTGGCAAGGGGAGACTTCAAGGTGCGCAAAACAGCCAATCATTGGACATGCAATCAAATTTCAATCCACAATTAAATTACTTCGACAATGAAGCCAGACTTCAGTTCCTGATGCAAAGATCTCTCACACAGCAGCAAAACCATAGATTTTCTGAAATTGGGAATAGTTATTCTCAACTTGGTGATTCATATGGTATTTCTTCAAGGTTAGACCAATCTCAAGTCAGTAACCTAGCCCCTTTCCCTCAGCTGTCTATGCAGCAGTCTACAAATGCAGTCTTTTCTAATGGCCAATGGAATGGGTGGAATGAGGTGCAGAGTGGGAACGGTCTGGGTGTTGCCGAACTTTTGAGGAATGAAAGACTTGGATTTAACAAGTTTTACCCAGGATACGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATATCTACAACAGAACTTTTGGCATGTGA 3093 0.4155 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTASKCERLLNEINMEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLDLADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYLKEEEAIRCIQNVHGFVLEGKPLRACFGTTKYCHAWLRNSPCINPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGATTNMQRRSGNVLPPPLDDCTDNSTERPIIKSAPTQNSVYTVRSSPPNGINGRHVPLPTSTAWGTQATSCQSPVGGLSHPSVLSKPKPDTVNSTLAFSTAVTGTIQASAAQGDGSRRPPSSDGSRNTLPRVKSELPKPIKQYNMDSLASASEKISACAVSAAPVNLKSELSSRPLSQDNDRGNCTANTLNSNNINGHSFNSGPEEAVPATNEVIRNLSSEFSSINIGRSTSIENYGMTKPSSRPTDHVLTKSPRIQEGSQYDVDRFKDPITNVVGKTSTSDSGIFSPKEQCGGILNSQSQLVSDTADIEDDVTSFDNQRLKDPEVCRSYLPKATNFLNVSKLSSPCLMPHGEPCTAGNADSLYSDDRVRDESILHSSSMLCNGYPEKLISGTSNGLLHDERNRQSIGRLVGDAVNTGCDVAIDKGESSIISNILSIDFDPWDDSITSPHNIVKLLSDNTDSQPGPLKKSSSWKVQNNNQSRFSFARQEESEIQTFDVHPSYAFSQQQPKSHALNQSLAERDFYMEKLGIANGFPTSNFEEAENISNAHSIASSNKLSAISRAQVSAPPGFSIPSRLPPPGFSSHERSEQTLDSLSGNSLLDHSPFLRNSHQTFSAGSIGGTGDIEFMDPAILAVVGKGRLQGAQNSQSLDMQSNFNPQLNYFDNEARLQFLMQRSLTQQQNHRFSEIGNSYSQLGDSYGISSRLDQSQVSNLAPFPQLSMQQSTNAVFSNGQWNGWNEVQSGNGLGVAELLRNERLGFNKFYPGYDDSKFRMPNSGDIYNRTFGM* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5078 1030 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Psa7g5078 1030 MobiDBLite consensus disorder prediction 351 373 - -
Psa7g5078 1030 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Psa7g5078 1030 MobiDBLite consensus disorder prediction 351 383 - -
Psa7g5078 1030 CDD RRM_CNOT4 105 204 IPR034261 -
Psa7g5078 1030 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Psa7g5078 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Psa7g5078 1030 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1030 IPR039780 GO:0004842|GO:0030014
Psa7g5078 1030 SMART rrm2_1 111 192 IPR003954 GO:0003676
Psa7g5078 1030 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Psa7g5078 1030 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Psa7g5078 1030 SUPERFAMILY RING/U-box 3 66 - -
Psa7g5078 1030 MobiDBLite consensus disorder prediction 311 332 - -
Psa7g5078 1030 Gene3D - 111 192 IPR012677 -
Psa7g5078 1030 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Psa7g5078 1030 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5078 Psa-Chr7 446231564 446240876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5078 K10643 - gmx:100813427 1523.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5078 7 446231564 446240876 Psa7g5078 7 446231564 446240876 ECH
Psa5g6357 5 539748136 539755838 Psa7g5078 7 446231564 446240876 PCT