Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6357 ATGGACATGGCTGAGAAGGACAACACAGAGGGACGGTGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAGAAAGATGAAGAGCCAAAAAGCAAAGTCTAAATCATCTGAAGGACGGAAGCAGCTCAATGATGTTCGAGTTATTAGGAGGAATCTTGTTTACATAGTGGGGTTGCCTCTCGACCTGGCTGATGAAGATCTTCTCCAGCAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGGACGGCAGCTGGTGTTGTTCAGCAGTTTCCAAACAGTACATGTAGTGTTTATATTACTTATTCAAAGGAAGAAGAAGCAGTTCGATGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTCGGAACAACTAAATATTGCCATGCATGGCTCAGAAACATGCCTTGTAACAATCCGGATTGTGTGTATCTTCATGAGATTGGCTCTCAAGAAGACAGTTTCACCAAAGATGAAATAGTTTCAGCATACACTAGAAGTCATGTTCAACATATTACTGGTGCTGCAACCAATATGGAACGGCGTTCAGGGAATGTATTGCCTCATCCGTTGGATGATTGCACGAGCAACAATTCAGAGAAACCCATTGCGAAAAATACTTCTAGTAACTCTGTTAGCACGGTAAGAGGTTCTCCTCCTAATGGAAGTCCTGCAAAGCCTATGGCTCCTCCTGCTGCATGGGGTTTGCGGGCTACAAATTGTCAGCCAGCTGCTGGTGGTCTATCATGTCCTACTGGACTGTCCAAGCCCAAGCCTGATTCTATCAGCAGCACACTACCCTTTTCCTCTGCTGTTGCAAGCACAAATCAAGTTTCTAAGCATAATGAGTCAATAAAGAGGCAAGTGTCAAGTGATGGGCGTCATAGTATAGTGCCTGGAGAAAAAAATAACACTATGAATGTCCTGGCGAGTGCAAGTGAAAAAACTTTGGCTTCTGATGTTTCTCTTGCACCTGTGAATTCAAACACCCAATTGTCTTCTATACCATTAGCCAGAGATGGTTGTACAACATCAAACACAACAAAGTCTATGGACATCACATCAAATTCAAATGGCAGCTTTTGTCCCGAAGAAGTGGTTGCTGCTACCAATGAAGAGATTCAAAATTTGTCATATGGGCTGTCCTCTCTTGACCTTGATAGAAATGTCCTAAATGAACATTATAACGTAACCAAACCTAGCAGCCCGCCTACTGATTATGTATTGGTTAAGTCTATGCAATCTCAAGGATCAGAACATATTGATAAGTTTAGAAATGTGGTAAATACAACAAACGCAGCTAGTAAAGCCTCTATATCAGATAGCGAGGTCTGTAAATCAAAACAATATGATTTAAAATTGGATTCTCAATCTAAGCTAGCATCTGGTTATGTTGAAGTAGAAGATGATGCGACATCTTTTGATAGTCAGAGACTCAAGGATCCAGAAGTTGTTAGTCATTCTTATTTGCCTAGGTCATGTTTCCCTTACGTCACAAATCATAATAATCCTCATCCTCTGCAGCATGGTGAACCTTGTACTGTTGTAAATACTGGTTCTTTAGCCACAGATAATGAAGTTGGGTATGAATCACAGTTACATGGATCTAAAGCATTATGCGATGGCTATTCTGAGAAATTAGACAGTACCAGCTCTTACAGTTTGCTTCATGATGAAAGCAATGATCATCACATTGGAAGATTAATTAGTAAAACAGTTAATATTGGAAATGATGCTGCCACAACAGATAATGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGAGTTTGATGCCTGGGATGATTTGGCGAAGCTGTTAAGTGACAGCACCGAAAATCAGAATGGTCCGCTAAAGAAATCTAGTTCTTGGAATGTTCAAACCAATCAATCAAGATTTTCTTTTGCAAGACAAGAGGAGTCCAAAATCCAAGCCTTTGATATGAATCCCTCTCATGGTGCCAACCAACAATTACTCAGAAGCCGCTCACTCATCCAAGATTTTGTGGAAACAACAGACGTGTCTTTGGACAAGGTGGGTATTGCATATGGCTTTCCCGCCAATAACATTGAGGAATCTGAAAATCTAAGCAGTGGTCAGTTTGTTGCTTCTTCCAATAAGCTTTCTGCTAACTCAAAACCACAAATTTCAGCGCCCCCAGGATTTTCAGTTCCAAGCAGGCCACCACCTCCTGGGTTTTCTTCTCATGAAAGAATGGGGCAGACTTTTGACTCAATTTCTGGGAATTCATTGCCTGACCCTTTCTTGTGGAGAAATTCATATCAGACACCATCAACTGGAAATTTTGGTGGTGCAGGAGACATTGAGTTTATGGATCCAGCTATTTTGGCAGTTGGTAAGGGGAGGCTTCAAGGTGCGCTAAACAGCCCAACACTAGACATGCAATCCAATTACACCCCACAATTAAATTACCTTGAGAACGAAGCCAGACTTCAGTTATTGCAAAGATCTCTCTCACCACAACATAACCATCGATTTTCGGAAATTGGAAACACATTTTCTCAGCTTGGTGATCCTTATGGAGTTTCTTCACGGATAGATCAATCACATGTCAGTAATCTGGCAACATTTCCTCAACTGTCTCTCCAGCAGTCTAGAAATGCTGTCTTGTCAAATGGCAATTGGGATGGGTGGAATGAATTGCAGAATGGAAATAGGATGGGTATGGCCGAGCTTTTAAGAAACGAAAGTCAACATTTCCTCAACTGTCTCTCCAGCAGTCTAGAAATGCTGTCTTGTCAAATGGCAATTGGGATGGGTGGAATGAATTGCAGAATGGAAATAGGATGGGCAGAAGTGGAAAAGCACAATTTTTCCGGCATTGCTAAAGGTGTTCGAGCTGGCTCTTGCTCTCGGCATTATCTGTCTAATGAACTTATGGCTACGATGATAGTCGAAGACGTGCAGTTTATAATTGCAAATGTTCCGGATTTGCCGAAGCAAGCTGTGTGA 3069 0.4158 MDMAEKDNTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSEGRKQLNDVRVIRRNLVYIVGLPLDLADEDLLQQREYFGQYGKVLKVSMSRTAAGVVQQFPNSTCSVYITYSKEEEAVRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCNNPDCVYLHEIGSQEDSFTKDEIVSAYTRSHVQHITGAATNMERRSGNVLPHPLDDCTSNNSEKPIAKNTSSNSVSTVRGSPPNGSPAKPMAPPAAWGLRATNCQPAAGGLSCPTGLSKPKPDSISSTLPFSSAVASTNQVSKHNESIKRQVSSDGRHSIVPGEKNNTMNVLASASEKTLASDVSLAPVNSNTQLSSIPLARDGCTTSNTTKSMDITSNSNGSFCPEEVVAATNEEIQNLSYGLSSLDLDRNVLNEHYNVTKPSSPPTDYVLVKSMQSQGSEHIDKFRNVVNTTNAASKASISDSEVCKSKQYDLKLDSQSKLASGYVEVEDDATSFDSQRLKDPEVVSHSYLPRSCFPYVTNHNNPHPLQHGEPCTVVNTGSLATDNEVGYESQLHGSKALCDGYSEKLDSTSSYSLLHDESNDHHIGRLISKTVNIGNDAATTDNGESSIISNILSMEFDAWDDLAKLLSDSTENQNGPLKKSSSWNVQTNQSRFSFARQEESKIQAFDMNPSHGANQQLLRSRSLIQDFVETTDVSLDKVGIAYGFPANNIEESENLSSGQFVASSNKLSANSKPQISAPPGFSVPSRPPPPGFSSHERMGQTFDSISGNSLPDPFLWRNSYQTPSTGNFGGAGDIEFMDPAILAVGKGRLQGALNSPTLDMQSNYTPQLNYLENEARLQLLQRSLSPQHNHRFSEIGNTFSQLGDPYGVSSRIDQSHVSNLATFPQLSLQQSRNAVLSNGNWDGWNELQNGNRMGMAELLRNESQHFLNCLSSSLEMLSCQMAIGMGGMNCRMEIGWAEVEKHNFSGIAKGVRAGSCSRHYLSNELMATMIVEDVQFIIANVPDLPKQAV* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6357 1022 CDD RRM_CNOT4 65 164 IPR034261 -
Psa5g6357 1022 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 939 IPR039780 GO:0004842|GO:0030014
Psa5g6357 1022 MobiDBLite consensus disorder prediction 304 324 - -
Psa5g6357 1022 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 156 IPR000504 GO:0003723
Psa5g6357 1022 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 150 IPR000504 GO:0003723
Psa5g6357 1022 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 939 - -
Psa5g6357 1022 SMART rrm1_1 71 152 IPR000504 GO:0003723
Psa5g6357 1022 MobiDBLite consensus disorder prediction 739 758 - -
Psa5g6357 1022 MobiDBLite consensus disorder prediction 223 261 - -
Psa5g6357 1022 MobiDBLite consensus disorder prediction 223 251 - -
Psa5g6357 1022 SMART rrm2_1 71 152 IPR003954 GO:0003676
Psa5g6357 1022 SUPERFAMILY RNA-binding domain, RBD 64 150 IPR035979 GO:0003676
Psa5g6357 1022 Gene3D - 71 152 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6357 Psa-Chr5 539748136 539755838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6357 K10643 - gmx:100796804 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6357 5 539748136 539755838 Psa5g6357 5 539748136 539755838 ECH
Psa5g6357 5 539748136 539755838 Psa7g5078 7 446231564 446240876 PCT