Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4980 ATGGCGTCCCAAGCCAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGCAAACATCCCGTCGATGGCTTTTCTGCTGGTTTGGTCGATGAAAGCAATATTTTTGAATGGAGTGTCACCATAATTGGACCCCCTGATACTCTCTATGAGGGAGGTTTTTTCAATGCGATAATGAGCTTTCCTTCCAATTATCCTAATAGTCCACCATCAGTGAAATTCACATCAGAGATATGGCACCCCAATGTATATCCTGATGGCCGGGTTTGCATATCTATCCTCCATCCTCCTGGTGATGATCCTAATGGTTACGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATCTCAATGCTCTCTGGTCCTAATGACGAATCTCCTGCAAATGTTGAAGCTGCAAAGGAGTGGAGAGATAGCAGAGATGAATTCAGGAAGAAGGTTGGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4451 MASQASLLLQKQLKDLCKHPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDSRDEFRKKVGRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4980 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Psa7g4980 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Psa7g4980 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Psa7g4980 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Psa7g4980 166 SMART ubc_7 7 164 - -
Psa7g4980 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Psa7g4980 166 CDD UBCc 17 159 IPR000608 -
Psa7g4980 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Psa7g4980 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4980 Psa-Chr7 439154280 439157702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4980 11 131 Miscellaneous Gene Families AT3G17000 30.769 1.98e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4980 K10575 - qsu:112026130 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4980 7 439154280 439157702 Psa7g4980 7 439154280 439157702 ECH
Psa7g4980 7 439154280 439157702 Psa6g5399 6 471161031 471163973 ECH