Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5399 ATGATCATATTGTTATTCATCACAGATCTTTGTAAGGCTCCTTTAGATGGCTTCTCAGCAGGTTTGGTTGATGAGAGCAATGTGTTTGAATGGAATGTCACCATCATTGGTCCACCTTATTCTCTCTATGATGGAGGATTTTTCAATGCAATCATGAGTTTTCCTCCTGATTATCCTCAGAATCCACCAAAAATGAAGTTTACTTCTGAGATTTGGCATCCTAATGTTGGTTATGAAGATTCCGGAGAGCGCTGGTTGCCTATTCATACGGTTGAAAGCATATCTCTGAGCATTATATCAATGCTTTCAAGCCCGAATATCGAGTCTCCTGCAAACATAGACGTTGCGATAGAATGGAGAGATAAGAGAGGTGAATTCAAAAAGAAAGTGGCTCGCTGTATAAGGAAGTCTCAAGAAATTGATGGAGGATTTTTCAATGCAATCATGAGTTTTCCTCCTGATTATCCTCAGAATCCACCAAAAATGAAGTTTACTTCTGAGATTTGGCATCCTAATGTTGGTTATGAAGATTCCGGAGAGCGCTGGTTGCCTATTCATACGGTTGAAAGCATATCTCTGAGCATTATATCAATGCTTTCAAGCCCGAATATCGAGTCTCCTGCAAACATAGACGTTGCGATAGAATGGAGAGATAAGAGAGGTGAATTCAAAAAGAAAGTGGCTCGCTGTATAAGGAAGTCTCAAGAAATCCGTCAGGTCTTAATCCCGACCTACGGTAACACTTTCCATCCTTCTTCCATGGCCGACTCGGATTCAAACTCCGATGAGGTGGTCGAGATGTATATCTCGGGCAAAGACAAACTAGGATATATTAATGGAGATCTCCCGCAACCCCCTCAAACAGATCCTACGTTTCGACGTTGGCGAACTGACAACGCGATTGTTGAGGGATGGATAATCAACTCAATGGACTCTTCTCTAATCAGCAACTTTATTCGCTTCTCCACTGCCAAGCTGGTGTGGGACGCAATTGCGACCACGTACTTTGATGGCAGTGACACCTCCCAGGTGTATGACCTTCGGCGACGGGTGACACGTCTTAAACAAGCCGGTGGTTCTCTTGAAAAATATTATAACGATCTCCAAGGACTTTGGTGTGAGATAGATTTTCGTCGTCCAAATCCGATGACATGTCAAGTTGATATCCAACACTACAATACACTTATCCAAGAAGAACGAGTGTATGTGTTTTTGGATGGACTTGATGACCGCTTAGATAATATCAGAAGCGATGTTTTACAAATGAAACCGTTTCCAACAGTGGAGCAAGCATATGCACATGTTAGGAGGGAAGCTCTTCGTCAGGCAGTGATGACAGACAACTCCAATGAATTATCTGGAG 1363 0.4255 MIILLFITDLCKAPLDGFSAGLVDESNVFEWNVTIIGPPYSLYDGGFFNAIMSFPPDYPQNPPKMKFTSEIWHPNVGYEDSGERWLPIHTVESISLSIISMLSSPNIESPANIDVAIEWRDKRGEFKKKVARCIRKSQEIDGGFFNAIMSFPPDYPQNPPKMKFTSEIWHPNVGYEDSGERWLPIHTVESISLSIISMLSSPNIESPANIDVAIEWRDKRGEFKKKVARCIRKSQEIRQVLIPTYGNTFHPSSMADSDSNSDEVVEMYISGKDKLGYINGDLPQPPQTDPTFRRWRTDNAIVEGWIINSMDSSLISNFIRFSTAKLVWDAIATTYFDGSDTSQVYDLRRRVTRLKQAGGSLEKYYNDLQGLWCEIDFRRPNPMTCQVDIQHYNTLIQEERVYVFLDGLDDRLDNIRSDVLQMKPFPTVEQAYAHVRREALRQAVMTDNSNELSG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5399 454 Pfam Ubiquitin-conjugating enzyme 142 230 IPR000608 -
Psa6g5399 454 Pfam Ubiquitin-conjugating enzyme 9 133 IPR000608 -
Psa6g5399 454 Gene3D Ubiquitin Conjugating Enzyme 6 140 IPR016135 -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 141 176 - -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 79 - -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 80 140 - -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 178 237 - -
Psa6g5399 454 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 139 IPR000608 -
Psa6g5399 454 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 141 236 IPR000608 -
Psa6g5399 454 SMART ubc_7 140 236 - -
Psa6g5399 454 SMART ubc_7 3 139 - -
Psa6g5399 454 Gene3D Ubiquitin Conjugating Enzyme 141 243 IPR016135 -
Psa6g5399 454 SUPERFAMILY UBC-like 141 240 IPR016135 -
Psa6g5399 454 CDD UBCc 7 134 IPR000608 -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7-LIKE 178 237 - -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7-LIKE 80 140 - -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7-LIKE 6 79 - -
Psa6g5399 454 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7-LIKE 141 176 - -
Psa6g5399 454 SUPERFAMILY UBC-like 8 137 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5399 Psa-Chr6 471161031 471163973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5399 3 106 Miscellaneous Gene Families AT3G17000 29.310 7.71e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5399 - - vvi:109123569 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4980 7 439154280 439157702 Psa6g5399 6 471161031 471163973 ECH
Psa6g5399 6 471161031 471163973 Psa6g5399 6 471161031 471163973 ECH