Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4176 ATGTGTGACACTATTTCTGGACCTGTTAATTTTGATAAACCTGTTAAAGGTTTTGAGAATGGAAATTTGGAGGATGAAAAGTTGACAAGGCTTGGATCCTTAAAGAAGGTAGCAATAAGTGCTTCTTCTAAGTTCAAACACTCCTTGAAGAAGGGGCGAAGGCATGGTAGGGTTATGTCTGTCGCCGAGGACGAACTCGATATAGAAGAGTTGCAGGCGATTGACGCTTTTCGTCAAATGCTAATCCAAGAAGATTTGTTACCCTCAAAACATGACCATGATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGAATGACATTGAGAAAACAAAGCAAATGTGGGCGGATATGCTCCAATGGAGGAAAGAATTCGGCGCGGACACCATCATGGAGGATTTTGAATTCAAGGAGATAGATGAAGTTCTAAAATACTATCCTCAAGGAACACATGGAGTTGATAAGGATGGAAGACCTGTTTACATAGAAAGTTTGGGTCAGGTAGACTCAAACAAGCTGATGCAAGTAACAACCATGGAGAGATATCTTAAGTACCATGTAAGAGAGTTTGAGAAGACACTCAATGTTAAGATGCCGGCTTGTTCGATTGCAGCGAAGAAACACATCGATCAAAGCACAACTATCTTGGATGTTCAAGGATTGGGTCTTAGAAGCATGAATAAAGCTGCGAGAGAACTCCTCCAGGGGCTTCAGAAGATTGATGGCGACAATTATCCTGAGTCGTTGAACCGTATGTTCATCATCAATGCTGGTTCGGGGTTTAGGATGTTGTGGAGTACTGTTAAGTCCTTCCTTGATCCCAAAACCACTTCCAAAATCCATGTACTAGGTAACAAATACCAAAGCAAGTTGCTCGAAATCATCGATGCAAGTGAACTTCCAGAGTTCTTGGGGGGTACATGTACTTGTGCAGACAAAGGTGGTTGCATGCTTTCTGACAAGGGACCATGGAATGATCCCGAAATTTTGAAGATGGTTCAAAATGGCGAAGCAAATTGCGTAACGAATACTTTATCCGGGATCAAGGAGGAGAAAACAATCATCACAGACAAAACATTGTATCAAAAGGATATTAAGGAATGTAATTCTTTCAAAAAAGAATATGCTCTTGAGGAGGCATGTCATGCTATAGCAGAAGTAGCAAAACAATGTAATAATGTATATAAATTTGACACCTTGGTCTCAATGAAGGACAAACCAATGTCTTGGAATGAAGCAATACAAAATGATCAAAAGGCACTTTCTCAAGGTGCAGATTGTTATGCCGGCAACATTTTCAAGACTTCAACTAGATTTAGAAATCACTTTGCTGGTGGAGTCATGGGCTTTGTTTTGGGACTCATAACGTTAATCCGCATGACACGGAACATGCCAAAGAAAATGACTGCAATTGCATTGTATGGTAACTCAGTATTATACGACGACGATATGATGAAAGCAGCGCCTGCCATATCCATTGACGACCGCATTGCTGTCATGAAGCGCATGGCCGATCTAGAAGAGAAGGTGAACAATCTCATCACGAGTCCTTCCATGCCACCTGAAATGGAAAAATTGCTCAACGCTACTCTAAGCCGTGTCGAAACACTCGAGCAAGAGTTGGCTACAACCCAGAAGGCCCTTGAAGATTCCCTTGCTATGCAAAAGTTGCTTCAATCAGAGATTGACAAAAAGAAAAAGAAGTTTTTCTACTGGTAA 1719 0.4119 MCDTISGPVNFDKPVKGFENGNLEDEKLTRLGSLKKVAISASSKFKHSLKKGRRHGRVMSVAEDELDIEELQAIDAFRQMLIQEDLLPSKHDHDHMMLRFLRARKNDIEKTKQMWADMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGTHGVDKDGRPVYIESLGQVDSNKLMQVTTMERYLKYHVREFEKTLNVKMPACSIAAKKHIDQSTTILDVQGLGLRSMNKAARELLQGLQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKMVQNGEANCVTNTLSGIKEEKTIITDKTLYQKDIKECNSFKKEYALEEACHAIAEVAKQCNNVYKFDTLVSMKDKPMSWNEAIQNDQKALSQGADCYAGNIFKTSTRFRNHFAGGVMGFVLGLITLIRMTRNMPKKMTAIALYGNSVLYDDDMMKAAPAISIDDRIAVMKRMADLEEKVNNLITSPSMPPEMEKLLNATLSRVETLEQELATTQKALEDSLAMQKLLQSEIDKKKKKFFYW* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4176 572 Coils Coil 527 554 - -
Psa7g4176 572 SMART CRAL_TRIO_N_2 93 118 IPR011074 -
Psa7g4176 572 CDD SEC14 139 307 IPR001251 -
Psa7g4176 572 Gene3D - 43 125 - -
Psa7g4176 572 Pfam CRAL/TRIO, N-terminal domain 90 117 IPR011074 -
Psa7g4176 572 Gene3D - 126 338 IPR036865 -
Psa7g4176 572 Pfam CRAL/TRIO domain 144 306 IPR001251 -
Psa7g4176 572 SUPERFAMILY CRAL/TRIO domain 138 334 IPR036865 -
Psa7g4176 572 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 138 312 IPR001251 -
Psa7g4176 572 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 8 568 - -
Psa7g4176 572 SMART sec14_4 138 309 IPR001251 -
Psa7g4176 572 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 8 568 - -
Psa7g4176 572 SUPERFAMILY CRAL/TRIO N-terminal domain 64 134 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4176 Psa-Chr7 340182365 340186124 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4176 72 303 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 2.08e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4176 - - gmx:100798374 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4176 7 340182365 340186124 Psa7g4176 7 340182365 340186124 ECH
Psa7g4176 7 340182365 340186124 Psa2g3575 2 389171438 389176015 ECH
Psa7g4176 7 340182365 340186124 Psa4g2235 4 179897303 179901502 ECH