Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2235 ATGTCTGCACCAGAATCTCCCAGGCCAGCTCTTGACAAGGTTGACCGTGTTGGATCATTGAAGAAGAAGCTGAGGGATTCCCTCACGAGGAGGAGTAGGCGAAGCAGCAGCAAGGTTATGTCGGTTGAGATCGAAGATGTCCGCGACGCTGATGATTTGAAAGCCGTTGATGAATTCCGTCAGGCTCTTGTGTTGGATGAACTTCTCCCAGAGAAGCATGATGACTATCATATGTTACTCAGATTCCTGAGGGCCAGGAAATTCGATATTGAGAAATCAAAGCAAATGTGGTCTGATATGCTTCAATGGAGGAAGGAATTTGGTGCCGACACTATTGTTCAGGATTTTGAATTTGAGGAGCTCGAGGAAGTGTTGCAATATTATCCTCATGGACATCATGGTGTCGATAAGGATGGACGACCGGTTTACATCGAGAGGTTGGGCCAAGTTGATGCCACCAAGTTGATGCAAGTCACAACCCTTGATCGATATATCAAATACCATGTCAAGGAATTTGAAAGGACATTTGATCTCAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAACACATAGATCAAAGCACCACCATTTTGGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAACAAGCCAGGGAGCTTATCACGCGCCTTCAGAAGATCGATGGTGACAATTATCCTGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACTGTTAAATCCTTCCTTGACCCAAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATGATTGATGCAAGTGAATTGCCAGAGTTTTTAGGAGGTACTTGTACCTGTGCTGATGAAGGAGGCTGCATGCGTTCCGATAAGGGTCCATGGAAGGACCAAGAAGTTTATAGGATGGTTCAGAATGGCGAGCACAAATGCTCAAAGAAATGTGAGGCTCCCATGGTAGAAGAGAAAACAATTCCTGAGGAAAGCGCGGCTTCCAAAATGGAGGCAGTTTTCACTGCACAATTGTCGTCTGCACAAATGGCTTCTGCCTTTGCCGCGGCCGCTTCTATAAAAGGTTGCAAGTACGAGGATTTTGTCCCTATGGCTGATCAAAATGCATGGAAGAAGGTCCAAGAAAATGACAACTTAGCATTATCAAAAGTTGGAGTAGAATCATTTGCCATGCCTGATTCGTGCAAGATTCACGAAAAAGTGAACTCACAGATTTTCACCGGCGTGATGGCCTTTGTGATGGGAATTGTAACAATGGTGAGGATGACTCGAAGCATGCCGAAGAAGCTCACCGATGCAAACTTCTACTCCAATTCTGTTTACTCCGGTGATGATGACAGTAAAGACCAAGACCCTTGTGACCAAATGACTAGCCCTACCATATCTGCTCAAGAATTCATGACTGTGATGAAACGTATGGCTGAGTTGGAAAACAAAATGGGTAACATGAACCAAAATGCTTCCATGCCACCTGAGAAGGAGGAAATGCTTAACGCTGCGATAAGTCGCGCTGATGCTCTAGAGCAAGAACTTATGGCAACTAAGAAGGCTTTAGAGGACTCACTTTCTAAACAAGAGGAGCTTTCGGCTTACATTGACAAAAAGAAAAAGAAGAAGAAGTTGTTTGCTTGGGCATGA 1683 0.4433 MSAPESPRPALDKVDRVGSLKKKLRDSLTRRSRRSSSKVMSVEIEDVRDADDLKAVDEFRQALVLDELLPEKHDDYHMLLRFLRARKFDIEKSKQMWSDMLQWRKEFGADTIVQDFEFEELEEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTLDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKQARELITRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEMIDASELPEFLGGTCTCADEGGCMRSDKGPWKDQEVYRMVQNGEHKCSKKCEAPMVEEKTIPEESAASKMEAVFTAQLSSAQMASAFAAAASIKGCKYEDFVPMADQNAWKKVQENDNLALSKVGVESFAMPDSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRSMPKKLTDANFYSNSVYSGDDDSKDQDPCDQMTSPTISAQEFMTVMKRMAELENKMGNMNQNASMPPEKEEMLNAAISRADALEQELMATKKALEDSLSKQEELSAYIDKKKKKKKLFAWA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2235 560 MobiDBLite consensus disorder prediction 1 35 - -
Psa4g2235 560 SMART sec14_4 120 291 IPR001251 -
Psa4g2235 560 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Psa4g2235 560 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Psa4g2235 560 PRINTS Cellular retinaldehyde-binding protein signature 280 289 - -
Psa4g2235 560 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Psa4g2235 560 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 556 - -
Psa4g2235 560 Pfam CRAL/TRIO, N-terminal domain 71 99 IPR011074 -
Psa4g2235 560 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 2 556 - -
Psa4g2235 560 Coils Coil 481 501 - -
Psa4g2235 560 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Psa4g2235 560 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Psa4g2235 560 Coils Coil 512 543 - -
Psa4g2235 560 SUPERFAMILY CRAL/TRIO domain 119 316 IPR036865 -
Psa4g2235 560 Gene3D - 25 107 - -
Psa4g2235 560 MobiDBLite consensus disorder prediction 9 35 - -
Psa4g2235 560 SUPERFAMILY CRAL/TRIO N-terminal domain 50 116 IPR036273 -
Psa4g2235 560 Gene3D - 108 319 IPR036865 -
Psa4g2235 560 CDD SEC14 131 289 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2235 Psa-Chr4 179897303 179901502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2235 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 27.386 1.59e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2235 - - lang:109350159 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3575 2 389171438 389176015 Psa4g2235 4 179897303 179901502 ECH
Psa4g2235 4 179897303 179901502 Psa4g2235 4 179897303 179901502 ECH
Psa7g4176 7 340182365 340186124 Psa4g2235 4 179897303 179901502 ECH