Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2401 ATGGATTATCAGTATATTCTTGGAGGGTTTCTTGCTTGTAGTTTAGCATTTGTGTTTGTTTTCTATAGTTTTGCAGAAAAGAAGAAGGTAAAGGAAAGAGGTTCAAGTTCAAATGCAAAAACATCATCGGAAAATGGAATATGGTCACATGAGGTTGAAGGAGAAACTGATATTATTATTGTAGGTGCTGGTGTTGCTGGTGCTGCTCTTGCTTATACACTTGGAAAGGATGGGCGGCGAGTGCATGTGATTGAAAGAGACTTGAGTGAACCTGATAGGATTGTGGGTGAATTGTTACAACCTGGTGGATATCTAAAGTTACTTGAGTTAGGTCTTGAAGATTGTGTGGATGAAATTGATGCACAAAGAGTCTTTGGCTATGCACTTTATAAGGATGGGAAAAACACCCGGTTGTCTTATCCCTTAGAAAATTTTGACTCTGATGTATCAGGAAGAAGCTTTCACAATGGTCGTTTCATACAAAGAATGCGAGAAAAGGCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTTTACTTGAAGAAAATGGAACCATCAAAGGGGTAAACTATAAAAACAAGAGTGGACAAGAGTTTACAAGAAAGGCTCCTCTTACCATAGTATGTGATGGTTGTTTTTCTAACTTGAGACGCTCTCTTTGTAATCCTAAGGTTGAAGTTCCTTCTCATTTTGTTGGACTGATATTGGAGAACTGTAACCTTCCATATGAAAATCATGGACATGTTATCTTGGGTGATCCTTCGCCAATTTTGTTTTATCCTATAAGTAGTACCGAGATTCGATGTTTGGTCGATGTGCCTGGCCAAAAACTACCTTCTGATCATGGACATGTTATCTTGGGTGATCCTTCGCCAATTTTGTTTTATCCTATAAGTAGTACCGAGATTCGATGTTTGGTCGATGTGCCTGGCCAAAAACTACCTTCTGTTGGTAATGGTGAAATGGCTCATTATTTGAAAACTGTGGTAGCACCTCAGGTTCCTCCAGAGTTGTATGCTTCTTTTATTGTAGCTATTGATAAAGGAAACATCAGAAGTATGCCAAATAGAAGCATGCCCGCCGCACCATATCCTACACCAGGGGCTCTTCTGATGGGAGACGCGTTCAATATGCGCCACCCTTTGACGGGAGGTGGAATGACGGTTGCATTGTCCGACATTGTTGTGCTAAGGAATCTACTTAAACCTCTACATAATCTTCATGATGCTTCTGCTCTTTGCAACTATCTCGAATCTTTCTACACATTAAGAAAGCCAGTGGCATCTACAATAAACACATTAGCAGGAGCATTATACAAAGTATTTTGCGCATCTCCTGATCCAGCTAGCATAGAAATGCGCCAAGCATGTTTCGATTATTTGAGCCTCGGAGGCGTTTTCTCAAACGGACCAATAGCTTTACTCTCCGGTCTGAATCCTCGTCCTCTGAGCTTGGTTCTCCATTTCTTCGCAGTGGCAATATACGGTGTCGGCCGCCTGTTGATTCCGTTTCCTTCTCCGAAACGAATGTGGATCGGAGCTAGACTAATATCAGGTGCATCAGGTATAATATTTCCAATTATTAAGGCAGAAGGAGTGAGACAAATGTTTTTTCCAGCAAGTGTGCCAGCATATTACAGAAGTCCTCCTGTCCATTAA 1671 0.4087 MDYQYILGGFLACSLAFVFVFYSFAEKKKVKERGSSSNAKTSSENGIWSHEVEGETDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGLEDCVDEIDAQRVFGYALYKDGKNTRLSYPLENFDSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGTIKGVNYKNKSGQEFTRKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLILENCNLPYENHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSDHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSVGNGEMAHYLKTVVAPQVPPELYASFIVAIDKGNIRSMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHNLHDASALCNYLESFYTLRKPVASTINTLAGALYKVFCASPDPASIEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPASVPAYYRSPPVH* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2401 556 Pfam NAD(P)-binding Rossmann-like domain 60 86 - -
Psa7g2401 556 Pfam Squalene epoxidase 206 284 IPR013698 GO:0004506|GO:0016021|GO:0050660
Psa7g2401 556 Pfam Squalene epoxidase 285 515 IPR013698 GO:0004506|GO:0016021|GO:0050660
Psa7g2401 556 SUPERFAMILY FAD/NAD(P)-binding domain 55 467 IPR036188 -
Psa7g2401 556 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 57 79 - -
Psa7g2401 556 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 370 385 - -
Psa7g2401 556 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 385 401 - -
Psa7g2401 556 Gene3D - 314 451 IPR036188 -
Psa7g2401 556 Gene3D - 53 264 IPR036188 -
Psa7g2401 556 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 284 - -
Psa7g2401 556 PANTHER SQUALENE MONOOXYGENASE-RELATED 285 556 - -
Psa7g2401 556 PANTHER SQUALENE MONOOXYGENASE 1 284 IPR040125 GO:0004506|GO:0016126
Psa7g2401 556 PANTHER SQUALENE MONOOXYGENASE 285 556 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2401 Psa-Chr7 170207135 170209581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2401 21 555 Miscellaneous Gene Families AT1G58440 72.067 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2401 K00511 - gmx:100800329 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2401 7 170207135 170209581 Psa7g2401 7 170207135 170209581 ECH
Psa7g2401 7 170207135 170209581 Psa1g4854 1 362119427 362123039 PCT