Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4854 ATGGTTTATCAGTATATTCTTGGAGGGATTATAGCTTATTATAGTTTGATGTTTGTGTTTGTTGTTTATGGTTCTGCATCAAAGAAAAAGATTAATGATTGTGTTAATATTAATAGTGCATCAGAAAATGGAAAAGTATGCTCTCAAGAAGCTTCTGAATGTATAGACATTATAATTGTAGGAGCTGGTGTTGCTGGTTCAGCCCTTGCTTACACACTTGGGAAGGATGGAAGACGAGTACATGTTATTGAAAGAGATTTGAGTGAACCAGATAGGATTGTGGGTGAATTGCTACAACCTGGAGGTTATTTGAAATTAATTGAGTTAGGCCTGGAAGATTGTGTAGAAGAAATTGATGCTCAAAGAGTCCTTGGCTATGTTCTTTATAAAGATGGAAAAAATACCAAACTTTCTTACCCTTTGAAAAAATATAATGCTGATATTTCTGGAAGAAGCTTTCACAATGGTCGTTTCATACAGAAAATGCGAGAGAAGGCTTCATCTATTCCAAATGTAAAGTTAGAAGAAGGAACTGTTACATCTTTGATAGAAGAAAATGGAAGCATCAAAGGGGTATACTATAGAACTAAGAGTGGACAAGAGATCATAGCAAATGCTCCCCTTACTATAGTTTGTGATGGTTGTTTTTCCAACTTAAGACGTTCCCTTTGCAACCCAAAGGTTGATGTACCATCTCATTTTGTTGGTTTGATACTAGAAAAATGCAACCTTCCACATGCAAACCATGGACATGTTATCTTAGGTAACCCTTCTTCCATTTTGTTTTATCCAATCAGTACCACTGAGACTCGTTGTTTAGTCGATGTTCCTGGCCAAAAACTACCTTCATTCTCCAACGGTGACATGGCACATTACCTCAAAACAGTGGTAACACCCCAGGTTCCACTAGAGCTACGCTGTTCTTTTATAGAAGCAGTTGATAAAGGAAACATAAGAAGCATGCCAAATAGAAGCATGCCAGCATGTCCTTATCCCAAACCAGGTGCCATTCTAATAGGAGATGCTTTCAACATGAGACACCCTTTAACTGGTGGAGGAATGACTGTGGCTTTCTCTGATATTGTTCTACTAAGAGATCTTCTCAGACCTATGCATCATTTACATGATTCATCTTCTCTTTGCAAATATCTCGAATCGTTTTACATCCTTCGCAAGCCAGTGGCATCTACGATAAACACGTTAGCCGAAGCATTATACAAAGTGTTTTGTGCGTCAAGTGACGCAGGGAGTAAGGAAATGAGAGAAGCATGTTTTGATTATTTGAGTCTTGGAGGAGTTTTCTCAGAAGGACCCGTTGCTTTACTTTCTGGTCTAAACTCGAGTCCATTGATCTTGCTTCTTCATTTCTTTGCCGTCGCTATATATGGTGTTTCTCGATTACTCTTGCCGTTTCCTTCTCCGAAACGCATGTGGATTGGAGCAAGATTGATTTATGGTGCATTAGGTATAATTTTTCCAATTATCAAAGATGAAGGAGTTAGAGAAATGTTCCTTCCCTTTACTGTGGCAGCATACTACAGAACACCACCTGCATAA 1557 0.3847 MVYQYILGGIIAYYSLMFVFVVYGSASKKKINDCVNINSASENGKVCSQEASECIDIIIVGAGVAGSALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEEIDAQRVLGYVLYKDGKNTKLSYPLKKYNADISGRSFHNGRFIQKMREKASSIPNVKLEEGTVTSLIEENGSIKGVYYRTKSGQEIIANAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLILEKCNLPHANHGHVILGNPSSILFYPISTTETRCLVDVPGQKLPSFSNGDMAHYLKTVVTPQVPLELRCSFIEAVDKGNIRSMPNRSMPACPYPKPGAILIGDAFNMRHPLTGGGMTVAFSDIVLLRDLLRPMHHLHDSSSLCKYLESFYILRKPVASTINTLAEALYKVFCASSDAGSKEMREACFDYLSLGGVFSEGPVALLSGLNSSPLILLLHFFAVAIYGVSRLLLPFPSPKRMWIGARLIYGALGIIFPIIKDEGVREMFLPFTVAAYYRTPPA* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4854 518 SUPERFAMILY FAD/NAD(P)-binding domain 56 429 IPR036188 -
Psa1g4854 518 Pfam NAD(P)-binding Rossmann-like domain 59 85 - -
Psa1g4854 518 PANTHER SQUALENE MONOOXYGENASE 1 517 IPR040125 GO:0004506|GO:0016126
Psa1g4854 518 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 517 - -
Psa1g4854 518 Pfam Squalene epoxidase 206 478 IPR013698 GO:0004506|GO:0016021|GO:0050660
Psa1g4854 518 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 56 78 - -
Psa1g4854 518 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 205 220 - -
Psa1g4854 518 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 348 - -
Psa1g4854 518 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 348 364 - -
Psa1g4854 518 Gene3D - 44 409 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4854 Psa-Chr1 362119427 362123039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4854 56 518 Miscellaneous Gene Families AT1G58440 75.162 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4854 K00511 - gmx:100796946 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4854 1 362119427 362123039 Psa1g4854 1 362119427 362123039 ECH
Psa7g2401 7 170207135 170209581 Psa1g4854 1 362119427 362123039 PCT