LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g1313	ATGGGAGGTCGCGGGAGGTCACGAACTCAAAGAAAGCACTTTCGTGACAACAGAGAAAACGTCTGGAAGCGTTCCAAATCCGATCCAGATTCTTCCTTATCCTCAGATAAACCTCAAACTACTCATTGGGCTCCTTTCGCTACTCAAAACCCTTCCTTCGATTCATATTACCAGGAACAGTTAATAGTGGATCCACAAGAATGGGACAAATTCATCGCAATTCTCAGAACACCGTTGCCTGCATCGTTTAGAATCAATGCTAGTAGTCAATTTGCTGACGATATTCGTTCTCAATTGGAAAATGATTTCGTGCATTCTCTTCGAGCCGAGGTTGCTGAAGGGGGTGAGACAGAGGCTATTCGGCCATTGCTCTGGTATCCTGGGAACTTTGCTTGGCATTCCAATTTTTCGCGGATGCAGCTTAGGAAGAATCAAACACTAGAGAGGTTCCACGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATGACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTATTCTTGGATGTGCATTCAGACCATTTTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTCGAGATTATACACCAATCAACAAAAGCAGGGTCACTACCTGCCGGAATGGTTATAGCAAATGATCTTGATGTCAAAAGATGTAATCTTCTCATCCACCAAACCAAAAGAATGTGCACAGCTAACCTAATTGTTACTAATCACGAAGCACAACATTTCCCTGGATGCCGTTTAAAAGGGAATCATAAAAGAAAGGAGTTAGATCACAATATTCACCAGCTGTTATTTGATCGTGTTTTGTGTGATGTCCCGTGTAGTGGAGATGGTACGCTTCGTAAGGCACCTGATATGTGGAGGAAATGGAATTCAGGGATGGGACAAGCGCTTCACAGCCTACAAATTTTAATTGCTATGCGAGGTTTATCATTACTCAAAGTTGGTGGAAGAATGGTTTACTCTACGTGCTCAATGAATCCTATTGAAAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGGTGTGGCGAGTCTGTCAAACTTCTTGATGTGTCTAGTGAGCTTCCACAACTAATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGAGCAGTTGGTTGGTCTCTTACAGTGATGTTCCCAAGTTTCGAAGAAGTGTAATTTTTCCCAGTATGTTTCCTTCTGGCAAAGGAAACCAGGATCTTGATAATGGTAATTGTAATGTTGTCATGGAAGATGACAATACTAGTGTAGAAAATGGAAAAACTGAAGATGGTGTTGAAGCACTAGAGAATCCGGTGACGTCCGAGTCTGCTGATGAAGTTTCGGCTTTTCCTCTAGAGCATTGCATGAGGATATTGCCTCATGATCAGAACACTGGGGCCTTCTTTATTGCTGTGCTGCAAAAAGTTTCTCCTCTGCCAGCTGTTACGGAAAAACCTAGCAAACAGATTGATGAACAAAATGTAGAACCACCAAACCAGAGTCTTGAGAATGCACAAGCACCGCTGATCAATTCATCCGACAGTACAATTGAAGAAGTCGTCAAAGCAGTTCCAGAGGAAAATATGATTGACAATGTATCCAATACAGAAGATTTGGAAGTTAGTCCTCTTACACATGAAGAACAGAATTCTGAGGAAACTGAACTGCCTCATAATGCTCAGGACACAGCAAAGAAGGTTGCAGGCAAAAGAAAGCTACAAATTCAAGGCCAATGGAGAGGTGTTGACCCTGTCGTCTTTTTTAAAGATGACACAATTATTAATAGTATAAGGGACTTTTATGGGATTGATGAGGGTTTTCCATTCAATGGCCACCTTATTACACGAAACAGTGATACCAGTCACGTGAAAAAGAATTTACTCATGTTCTCCAAGTTTGTCAAGGATATTCTTGAGTTGAACTTTTCAGCTGGGCAGCAACTGAAAATAACCTCAGTTGGCATGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTACCGATGCACCATGTGCTTTCAGGATATCGTCTGAAGGATTGCCCCTTATTCTCCCATACATAACAAAGCAAATTATACAGGCTTCTCCTGTGGACTTCAAGCATCTTCTGCAAGACAAAGATGTAAAATTTACAGATTTTGCTGATGCTGAGTTTGGTAAAAAGGCAGAAAATCTATTGCCAGGCTGTTGCGTGATAGTTCTGGGTAAAGAGAACACAGTTTCTAAAGAGTCCCTCAAAGTTGATGAGTCAACAATAGCCATCGGATGCTGGAGGGGTAGGGCAAGGTTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAATAG	2346	0.4203	MGGRGRSRTQRKHFRDNRENVWKRSKSDPDSSLSSDKPQTTHWAPFATQNPSFDSYYQEQLIVDPQEWDKFIAILRTPLPASFRINASSQFADDIRSQLENDFVHSLRAEVAEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNMTRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPAGMVIANDLDVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLKGNHKRKELDHNIHQLLFDRVLCDVPCSGDGTLRKAPDMWRKWNSGMGQALHSLQILIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEVLRRCGESVKLLDVSSELPQLIRRPGLKRWKVYDKSSWLVSYSDVPKFRRSVIFPSMFPSGKGNQDLDNGNCNVVMEDDNTSVENGKTEDGVEALENPVTSESADEVSAFPLEHCMRILPHDQNTGAFFIAVLQKVSPLPAVTEKPSKQIDEQNVEPPNQSLENAQAPLINSSDSTIEEVVKAVPEENMIDNVSNTEDLEVSPLTHEEQNSEETELPHNAQDTAKKVAGKRKLQIQGQWRGVDPVVFFKDDTIINSIRDFYGIDEGFPFNGHLITRNSDTSHVKKNLLMFSKFVKDILELNFSAGQQLKITSVGMKMFERQTAREGTDAPCAFRISSEGLPLILPYITKQIIQASPVDFKHLLQDKDVKFTDFADAEFGKKAENLLPGCCVIVLGKENTVSKESLKVDESTIAIGCWRGRARLSVMVTAMDCQE*	782

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g1313	781	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	71	483	IPR001678	GO:0008168
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase signature	186	196	IPR023267	GO:0001510
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase signature	276	288	IPR023267	GO:0001510
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase signature	326	342	IPR023267	GO:0001510
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase signature	465	482	IPR023267	GO:0001510
	Psa7g1313	781	Pfam	16S rRNA methyltransferase RsmB/F	176	361	IPR001678	GO:0008168
	Psa7g1313	781	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	4	781	IPR023267	GO:0001510
	Psa7g1313	781	MobiDBLite	consensus disorder prediction	548	569	-	-
	Psa7g1313	781	MobiDBLite	consensus disorder prediction	12	31	-	-
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	132	153	IPR023270	GO:0016428
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	360	379	IPR023270	GO:0016428
	Psa7g1313	781	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	655	667	IPR023270	GO:0016428
	Psa7g1313	781	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	4	781	-	-
	Psa7g1313	781	ProSitePatterns	NOL1/NOP2/sun family signature.	275	286	IPR018314	GO:0003723\|GO:0008168
	Psa7g1313	781	Gene3D	Vaccinia Virus protein VP39	47	392	IPR029063	-
	Psa7g1313	781	MobiDBLite	consensus disorder prediction	539	569	-	-
	Psa7g1313	781	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	52	483	IPR029063	-
	Psa7g1313	781	MobiDBLite	consensus disorder prediction	1	44	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g1313	Psa-Chr7	96154845	96164738	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g1313	K15334		-	gmx:100808859	1242.25

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa7g1313	7	96154845	96164738	Psa5g2123	5	165360775	165368360	PCT