Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2123 ATGGGGCGAGGCAAAGGAGGGAAGAGCCGTACTCAGAGGAAGCATTTCCAGCAAAACAGAGAGAACGTTTGGAACCAACACCGTCCAGAATCACTTCCTTCCACCACAAACCCTTACGATATTCAAAACCCTGATTTCGATCACTATTACAAGGAGCAGAACATAGTGTCCCTAGAAGAATGGGATTCATTTATGCAAGTTCTCAGAACTCCATTACCTGCAGCATTTAGAATCAATTCCAGTAGCCTTTTTCATGCCGATATTCGGTCCCAGCTGGAAAATGACTTTGCACGTGCTCTCCAGGCCATTGTTCTTGAAGGGGATGAGGAGGATGCTATTAGACCCTTGCCATGGTATCCTGAAAATCTTGCTTGGCATTCTAATTTTTCCCGTATGCAGCTCAGGAAGAATCAATCACTTAAGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACTAGACAGGAAGCTGTCAGCATGGTGCCTCCTCTGTTCTTAGATGTACATTCGAATCACATTGTACTTGATATGTGTGCTGCCCCAGGTTCAAAAACATTCCAATTGCTTGAAATTTTACACCGATCAACTAAAGCAGGATCATTGCCTGATGGAATGGTTATAGCAAATGATCTAGATGTACAAAGATGTAATCTTCTCATCCACCAAATAAAACGAATGTGCACAGCAAACCTAATTGTCACCAACCATGAAGCTCAGCACTTCCCAGGATGTCATTTGAACTTGGATTGTGATATAAGGGGTTCAAGTCAGCATGCTTCCCAACTGCTATTTGATCGTGTTCTGTGTGACGTACCCTGTAGTGGAGATGGTACCCTCCGCAAAGCACCTGATCTCTGGAGGAGATGGAACACGGGGACAGGAAATGGACTTCACACCCTACAAATTTTAGTTGCCATGCAAGGCTTATCTTTACTTAAAGTTGGTGGAAGGATGGTTTATTCAACCTGCTCAATGAATCCTATTGAAAATGAAGCTGTTGTTGCAGAGATTTTGCGGAGGTGCAAAGGTTCTGTTGAACTTGTTGATGTCTCCAGTGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTGAAGAGATGGAAGGTGCGTGACAAGGGCAAGTCCTTGGTTTCCTGCAAAGAGGTTGACAAGGTTCGTAGAAGTGCAGTTCTGCCCAGCATGTTTCCAAATGGCGGAAACTATCGAGATATTGACTGTAACAGTAATTGTGATGTTAATGGACATCCTGAAGATGGTGTTCAAGTAGAGGAGAATCCTGCGATGCATGAGTTTACTGAGATAGTTTCTGATTTCCCACTAGAGCTATGCATGCGTTTACTGCCCCATGATCAGAACTCTGGAGCCTTCTTTATAGCTGTATTGCAAAAAAATTCTCCTCTGCCAGCAATTGAAGTAAAACGTAGAAAAGAAGTTAATAATCAACATGTAGAATCAGTAAACCAGGGCAGTGAGGATGCACAAGTATTGCAAATTTATCCATCAGAAAGTACACATGAAGAAGTTTGCAAACAAGTTTCCGATGATAATAAAAATGAGCCAAATGAACCCAACACTGCAGATTTTAAGTTTAGCCCTGTTATAGACGAAGAAGGGGAATCCGAGGAAGCCCAGGAGCCCCACAATGAAGAAAACATAGCAAAGATCACTCCAAGCAAAAGAAAGCTTCAGATACAAGGCAAATGGAGAGGTGTTGATCCTGTCATCTTCTTCAAAGATGAATCAATTATAAAAAGCATAGAGGCATTTTATGGCATTGATGAACAGTTCCCGTTAGACGGTCACCTTGTAACAAGAAACAGCGATACAAGCAATGTAAAAAGAATTTACTACATCTCCAAGTCAGTCAAGAATGTTCTTGAGTTGAACCTATCAGTTGGGCAGCACCTGAAAATAACTTCTGTTGGCCTAAAAATATTTGAAAGACAAAAGTCACGTGAAGGTAGATCCGTCGAATGTGCTTTCAGAATTGCTTCTGAAGGATTGCCTCTTATCCTCCCTCATATCACCAAACAGATCCTAAGTGCATCTGCTATAGATTTCAAGCATCTTCTCCAGTATAAAAATGTAAAATTTGCAGAATTTGTTGATGCCAAATTTGGTGAAATGGTGGCAAACCTAAAGCCAGGCTGTTGCGTGATCGTTCTCGGTGAAGGAAACAAAGTCTCTGCAGAGGCTCTCCAAGTGGATGAATCATCAATAGCCATTGGATGCTGGAAGGGTCGGGCAAGTTTGACCGTGATGGTTACTTCAATAGAATGTCAAGAACTGCTTGAAAGGCTTTTAATGCGTTTAGACAGGGAAACAGAAAAAGGGTCCTCCATGCATGAGGACAAACCATCTAATAATGTGAGATATGTAGAACAGGAATCAAATAGAAAGGCTTTTAATGCGTTTAGACAGGGAAACAGAAAAAGGGTCCTCCATGCATGA 2460 0.4187 MGRGKGGKSRTQRKHFQQNRENVWNQHRPESLPSTTNPYDIQNPDFDHYYKEQNIVSLEEWDSFMQVLRTPLPAAFRINSSSLFHADIRSQLENDFARALQAIVLEGDEEDAIRPLPWYPENLAWHSNFSRMQLRKNQSLKRFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSNHIVLDMCAAPGSKTFQLLEILHRSTKAGSLPDGMVIANDLDVQRCNLLIHQIKRMCTANLIVTNHEAQHFPGCHLNLDCDIRGSSQHASQLLFDRVLCDVPCSGDGTLRKAPDLWRRWNTGTGNGLHTLQILVAMQGLSLLKVGGRMVYSTCSMNPIENEAVVAEILRRCKGSVELVDVSSELPQLIRRPGLKRWKVRDKGKSLVSCKEVDKVRRSAVLPSMFPNGGNYRDIDCNSNCDVNGHPEDGVQVEENPAMHEFTEIVSDFPLELCMRLLPHDQNSGAFFIAVLQKNSPLPAIEVKRRKEVNNQHVESVNQGSEDAQVLQIYPSESTHEEVCKQVSDDNKNEPNEPNTADFKFSPVIDEEGESEEAQEPHNEENIAKITPSKRKLQIQGKWRGVDPVIFFKDESIIKSIEAFYGIDEQFPLDGHLVTRNSDTSNVKRIYYISKSVKNVLELNLSVGQHLKITSVGLKIFERQKSREGRSVECAFRIASEGLPLILPHITKQILSASAIDFKHLLQYKNVKFAEFVDAKFGEMVANLKPGCCVIVLGEGNKVSAEALQVDESSIAIGCWKGRASLTVMVTSIECQELLERLLMRLDRETEKGSSMHEDKPSNNVRYVEQESNRKAFNAFRQGNRKRVLHA* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2123 819 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 786 - -
Psa5g2123 819 MobiDBLite consensus disorder prediction 1 35 - -
Psa5g2123 819 MobiDBLite consensus disorder prediction 515 534 - -
Psa5g2123 819 ProSitePatterns NOL1/NOP2/sun family signature. 268 279 IPR018314 GO:0003723|GO:0008168
Psa5g2123 819 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 786 IPR023267 GO:0001510
Psa5g2123 819 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 64 467 IPR001678 GO:0008168
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 125 146 IPR023270 GO:0016428
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 353 372 IPR023270 GO:0016428
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 639 651 IPR023270 GO:0016428
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase signature 179 189 IPR023267 GO:0001510
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase signature 269 281 IPR023267 GO:0001510
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase signature 319 335 IPR023267 GO:0001510
Psa5g2123 819 PRINTS RNA (C5-cytosine) methyltransferase signature 449 466 IPR023267 GO:0001510
Psa5g2123 819 Gene3D Vaccinia Virus protein VP39 40 466 IPR029063 -
Psa5g2123 819 Pfam 16S rRNA methyltransferase RsmB/F 169 354 IPR001678 GO:0008168
Psa5g2123 819 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 466 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2123 Psa-Chr5 165360775 165368360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2123 K15334 - gmx:100808598 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1313 7 96154845 96164738 Psa5g2123 5 165360775 165368360 PCT