Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0940 ATGTCTCACGACAACAACTCTTCTGCAGACCAAACAGCAACACCACAAGCTGAGGAAGTTGTTGTTGTTGCCGGTGTGAATGTTCCACAGCATGAAAAACCAAATACTGTTTCCTTAGAATCAGAGCAACAAGATCCACAAAGTGAACCTGAGAGGAAAAATAACTCAGTTCCTGTTGTTGAATCTGTCACTCTAGAGACTCATCTCTCCAAACCCAATACCGATGATACCACTGATACTGATAAAGATGAAACCACTAAAACTTCTCAATCTGATCGTCCCGAGAATGAAAACAAGCCACTCCAAGAGCTTAAGAATCTCGTTCAACAAGCACTCAACAACCATGAATTCTCTTCCTTGCCCATGATTGAAGATAAACCACCCACCACCATTGTTGCTGAAGCTGATAAAGAAGAACCTGCACAACAAAAGCCTGTTCAAGAGAAAATTGAATCAAAAGATGAAGCTACATTGTCATTACCACGAGAAGAAGTATCCATTTACGGGATACCACTTCTTGCCGACGAAAGAAGCGACGTGATTCTGTTGAAGTTTCTGCGTGCAAGAGATTTTAAGGTTAAAGAAGCTCTCACCATGATCAAAAACACAATTCGCTGGAGAAAAGAATTCGGAATAGAGGAGTTGTTGGATGAGAAACTGGGTGATGAATTGGAGAAAGTTGTTTACATGCATGGATTTGACAAGGAAAATCACCCTGTGTGTTATAACATATATGGTGAGTTTCAGAATAAGGAATTGTATAAGAAAACATTTTCTGATGAGGAGAAGAGACAGAATTTTCTTAGGTGGAGAATTCGGTTTCTTGAGAAGAGTATTAGGAATTTGGATTTTAACAATGGTGATGCATGTACTATTGTTCATGTCAATGATCTTAAGGATTCTCCTGGACCTGGTAAATGGGAAATTAGACAAGCTACCAAACAAGCCCTTCAATTGTTTCAAGACAATTACCCTGAGTTTGTGGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCTGTGAATAGGATGATAAGCCCTTTTCTTACACAAAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCAAAATCAACAGAGACCCTTTTAAGCTACATAGCTCCAGAGCAACTTCCGGTGAAATATGGTGGATTGAGCAAAGATGGTGAATTTGGAAATTCAGATGCTGTTACTGAGATTACAATAAAGCCAACATCAAAACATACTGTGGAATTTCCAGTTACTGAGAAATGTTTAGTGTCTTGGGAGGTGAGAGTAATAGGGTGGGAAGTAAAGTATGGTGCGGAATTTGTACCAAGCAATGAAGAAAGCTATACTGTGATTGTTCAAAAGGGTAGAAAAGTGAGTTCATCAGAAGAAGCAGTGATTTGCAACAGTTTTAAAGTTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAACACAAGTTCTAGGAAGAAAAAGCTCTTGTACCGCTTTAAGATCAAGTCGGACTGA 1503 0.3965 MSHDNNSSADQTATPQAEEVVVVAGVNVPQHEKPNTVSLESEQQDPQSEPERKNNSVPVVESVTLETHLSKPNTDDTTDTDKDETTKTSQSDRPENENKPLQELKNLVQQALNNHEFSSLPMIEDKPPTTIVAEADKEEPAQQKPVQEKIESKDEATLSLPREEVSIYGIPLLADERSDVILLKFLRARDFKVKEALTMIKNTIRWRKEFGIEELLDEKLGDELEKVVYMHGFDKENHPVCYNIYGEFQNKELYKKTFSDEEKRQNFLRWRIRFLEKSIRNLDFNNGDACTIVHVNDLKDSPGPGKWEIRQATKQALQLFQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLPVKYGGLSKDGEFGNSDAVTEITIKPTSKHTVEFPVTEKCLVSWEVRVIGWEVKYGAEFVPSNEESYTVIVQKGRKVSSSEEAVICNSFKVGEPGKVVLTIDNTSSRKKKLLYRFKIKSD* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0940 500 MobiDBLite consensus disorder prediction 31 71 - -
Psa7g0940 500 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 397 496 IPR036598 -
Psa7g0940 500 MobiDBLite consensus disorder prediction 72 100 - -
Psa7g0940 500 PANTHER PATELLIN-3 PROTEIN 153 499 - -
Psa7g0940 500 PANTHER PATELLIN-3 PROTEIN 42 148 - -
Psa7g0940 500 MobiDBLite consensus disorder prediction 1 15 - -
Psa7g0940 500 SUPERFAMILY CRAL/TRIO domain 227 389 IPR036865 -
Psa7g0940 500 MobiDBLite consensus disorder prediction 1 101 - -
Psa7g0940 500 SUPERFAMILY CRAL/TRIO N-terminal domain 94 218 IPR036273 -
Psa7g0940 500 ProSiteProfiles GOLD domain profile. 396 497 IPR009038 -
Psa7g0940 500 SMART sec14_4 222 389 IPR001251 -
Psa7g0940 500 Gene3D - 213 401 IPR036865 -
Psa7g0940 500 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 217 392 IPR001251 -
Psa7g0940 500 Gene3D GOLD domain 402 497 - -
Psa7g0940 500 CDD SEC14 223 387 IPR001251 -
Psa7g0940 500 PANTHER PATELLIN-1 153 499 IPR044834 GO:0008289
Psa7g0940 500 PANTHER PATELLIN-1 42 148 IPR044834 GO:0008289
Psa7g0940 500 SMART CRAL_TRIO_N_2 178 203 IPR011074 -
Psa7g0940 500 Pfam CRAL/TRIO domain 226 386 IPR001251 -
Psa7g0940 500 Pfam CRAL/TRIO, N-terminal domain 152 202 IPR011074 -
Psa7g0940 500 Gene3D - 132 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0940 Psa-Chr7 72907277 72910329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0940 182 381 Acyl Lipid Metabolism Gene Families AT1G55840 27.273 2.92e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0940 - - gmx:100804544 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0940 7 72907277 72910329 Psa7g0940 7 72907277 72910329 ECH
Psa7g0940 7 72907277 72910329 Psa5g1340 5 104671287 104674441 PCT