Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1340 ATGGCTGAGGAAGTTCCAAAGAAAACAACAATAGCAATAGTCCAAGAGACACTGCCTCTTGCCGAGCCCGAGCCCGAGCCCAAGTCCAACCCAGTGCCCGAGGAAAAGCCCGTTGAAAACAAGACTGAAGAGAATGCGGCTGAGACGGAGGCATCAAAGCCCGGGGGTGACGAGAAAATGCCCGAGTCGGGCTCGTTCAAGGAAGAGACTACCATCGTTGGCGAGCTACCTGAAGCTGAGAAGAAAGCACTTCAAGAGCTGAAAGAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTTCAGATTCAACTCCTACTCTTAATCCACCAGATGAACAAAAGCCCGAACTCACACCAGAAGCAGAATCACAACCACCTGCTGAAGAAAACAACAAGAAAGAAGAGCTGAACAACGAACAAGTATCAGAAACAGAATCCGTTGTTGCTGTTTCAACCGCCGATGATGACGTGACACCGTTACCACCACCAACAACAGTAACAACAACAACTGAAACTGAGAAACCTAACGAAGAAGGAGAAAAGGAAGAAGAAACCGAGGTGGCTGCTTCTTCTATAGACGAAGACGGAGCAAAAACGGTTGAAGCGATTGAAGAAACCGTAGTAGCGGTCTCTTCATCGATTCCAGAAGAACCAAAAGCGGTGGAACCTTCTTCACCGGAAGTGGTTTCAATATGGGGGGTCCCACTGCTCTTAGACGAAAGAACCGACGTGATTCTGTTAAAGTTTCTCCGAGCAAGAGACTTCAAAGTGAAAGAATCCTTCACAATGATCAAGAACACAATCCGTTGGAGAAAAGAGTTCAAAATCGAAGAACTGTTATTCGATGAAAGCCTAAACGATGAACATTTACAGAAAACTGTTTACATGCAAGGACACGACAAAGAAGGCCACCCTGTATGTTACAACATTTACGGAGAATTCGAAAACAAAGAGGTTTACAAGAAAACATTTTCCGATGAAGAGAAGAGACAAAATTTTCTGAAATGGAGAATTCAGTTTCTGGAGAAGAGTATCAGAAAGTTGGATTTTAACCCTGGTGGCATTTCCACCATTGTTCAGGTTTATGACCTTAAGAATTCTCCTGGACCTACCAAATGGGAGCTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAAGATAATTACCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTATTTGGCTGTGAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTTGTTTTTGCTGGACCTTCTAAATCAGCTGAAACACTTCTAAGATACATAGCTCCGGAACAACTTCCGGTTAAGTACGGTGGACTAAGCAAAGACGGTGAATTCGGAATTACCGATGCTGTTACAGAAATTACAGTGAGGCCTGCAGCAAAACATATTGTGGAGTTTCCGGTTACTGAGAATTGTTTACTCTTTTGGGAGGTAAGAGTTATCGGGTGGGACATAAGTTATGGTGCAGAATTTGTTCCAAATTCAGAAGAAAACTATACTGTGATAATCCAGAAGAGTAGAAAAGTTGGTTCATCAGAAGAACCGGTTATTTGCAACAACTACAAAATTGATGAACCTGGGAAAGTTGTTTTGACCATTGAGAATTCAAGCTCTAAGAAGAAGAAACTCTTGTATCGTTTGAAGACTAAAACTTCAAATTCTGATTAG 1713 0.4221 MAEEVPKKTTIAIVQETLPLAEPEPEPKSNPVPEEKPVENKTEENAAETEASKPGGDEKMPESGSFKEETTIVGELPEAEKKALQELKELIQEALNKHEFSSDSTPTLNPPDEQKPELTPEAESQPPAEENNKKEELNNEQVSETESVVAVSTADDDVTPLPPPTTVTTTTETEKPNEEGEKEEETEVAASSIDEDGAKTVEAIEETVVAVSSSIPEEPKAVEPSSPEVVSIWGVPLLLDERTDVILLKFLRARDFKVKESFTMIKNTIRWRKEFKIEELLFDESLNDEHLQKTVYMQGHDKEGHPVCYNIYGEFENKEVYKKTFSDEEKRQNFLKWRIQFLEKSIRKLDFNPGGISTIVQVYDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPAAKHIVEFPVTENCLLFWEVRVIGWDISYGAEFVPNSEENYTVIIQKSRKVGSSEEPVICNNYKIDEPGKVVLTIENSSSKKKKLLYRLKTKTSNSD* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1340 570 Pfam CRAL/TRIO domain 293 453 IPR001251 -
Psa5g1340 570 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 283 459 IPR001251 -
Psa5g1340 570 ProSiteProfiles GOLD domain profile. 463 564 IPR009038 -
Psa5g1340 570 PANTHER PATELLIN-3 PROTEIN 23 570 - -
Psa5g1340 570 SMART CRAL_TRIO_N_2 243 268 IPR011074 -
Psa5g1340 570 Coils Coil 84 104 - -
Psa5g1340 570 Gene3D GOLD domain 469 564 - -
Psa5g1340 570 PANTHER PATELLIN-1 23 570 IPR044834 GO:0008289
Psa5g1340 570 MobiDBLite consensus disorder prediction 1 193 - -
Psa5g1340 570 MobiDBLite consensus disorder prediction 97 112 - -
Psa5g1340 570 SUPERFAMILY CRAL/TRIO domain 293 456 IPR036865 -
Psa5g1340 570 MobiDBLite consensus disorder prediction 127 141 - -
Psa5g1340 570 MobiDBLite consensus disorder prediction 73 96 - -
Psa5g1340 570 MobiDBLite consensus disorder prediction 28 65 - -
Psa5g1340 570 Gene3D - 195 468 IPR036865 -
Psa5g1340 570 CDD SEC14 291 454 IPR001251 -
Psa5g1340 570 SMART sec14_4 289 456 IPR001251 -
Psa5g1340 570 Pfam CRAL/TRIO, N-terminal domain 232 267 IPR011074 -
Psa5g1340 570 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 465 563 IPR036598 -
Psa5g1340 570 SUPERFAMILY CRAL/TRIO N-terminal domain 71 283 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1340 Psa-Chr5 104671287 104674441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1340 247 448 Acyl Lipid Metabolism Gene Families AT5G47730 27.488 3.33e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1340 - - gmx:100805585 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1340 5 104671287 104674441 Psa5g1340 5 104671287 104674441 ECH
Psa7g0940 7 72907277 72910329 Psa5g1340 5 104671287 104674441 PCT