Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0895 ATGTCTAGGGTTTTGGCGCAGTCAATTAACGTCCCTGGCCTAGTGGCTGGGCAAAGGCATGGTGGCAATAACAGCAAGGGTTTTGCGAAACCCAGAAGGTCTGTTAAAATGATGTATGCTTCACGAACTGCTTCTCCGAGAGTGGCTGGTTTTTCAGGGTTAAGAACTTTGAATTCTTTGGGTTCTATGTTGAGACCCAGTCAAGATTTTCATTCTAAGGTGTTTAGTCAGATGGCGATTAGTAGAGCGAAGACCGGTAGAGGTAGTAGATGTGTAACGAAAGCTATGTTTGAGCGGTTCACTGAGAAGGCGATTAAAGTGATTATGTTGGCTCAGGAGGAAGCGAGGCGTTTGGGGCATAATTTTGTTGGAACGGAACAGATTTTATTGGGTCTTATTGGTGAGGGTACTGGTATTGCTGCTAAGGTATTGAAGTCTATGGGGATTAACTTGAAAGATGCGCGTGTCGAAGTGGAGAAGATAATTGGAAGGGGGAGTGGTTTTGTTGCTGTTGAGATTCCGTTTACTCCTCGTGCTAAGAGGGTTTTGGAACTCTCATTGGAGGAGGCCCGCCAACTTGGTCACAATTATATTGGAGCCGAGCACTTGCTTTTGGGTCTTCTTCGAGAGGGCGAGGGTGTGGCAGCACGTGTTCTTGAAAATCTGGGTGCTGATCCAAATAATATTCGAACCCAGGTTATTCGCATGGTTGGCGAGGGTGCTGACAGTGTTGGGGCTACTGTTGGCTCTGGAAGTAGTAACAATAAGACACCAACTTTGGAAGAGTATGGCACCAATTTGACCAAGCTAGCCGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATCTTAGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGGAAGACAGCTATTGCTGAAGGTCTTGCTCAACGGATTGCAAACGGCGATGTCCCCGAAACTATAGAGGGAAAGAAGGTTATAACCCTAGATATGGGTCTACTCGTTGCTGGAACTAAATACCGTGGAGAATTTGAGGAGAGGTTGAAAAAACTGATGGAGGAAATCAAACAAAGTGATGATATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCAGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACCACATTAGATGAATATAGGAAGCATATTGAAAAAGATCCCGCTTTAGAGAGGCGATTCCAACCAGTTAAAGTGCCAGAACCAACCGTGAGTGAAACCATACAAATTCTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCCGCTGCAGAGCTCTCTCATCAATATATCAGTGATCGGTTTTTGCCTGATAAAGCTATTGATTTGATTGACGAAGCTGGATCCCGTGTCCGACTTCAACATGCACAGTTACCTGAAGAAGCAAGAGGTCTCGAAAAGGAGGTTAGGCAGATTGTCAAGGAGAAAGATCAAGCTGTCCGCAACCAAGAATTTGAGAAGGCTGGAGAGCTGCGGGATAAAGAAATGGATCTTAAGACTCAGATATCAGCACTTATAGAAAAAAACAAGGAGATGAACAAGGCAGAGAGTGAGGCAGGAGACGAAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGACAAAGTCTCGGTTGACGAATCTGACCGCCTTCTCAAAATGGAAGATACCCTTCACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGGGCTATTCGCCGAGCTCGTGTTGGACTTAAGAACCCTAATCGGCCAATCGCCAGCTTCATCTTTTCCGGCCCTACTGGTGTGGGAAAGTCTGAGTTGGCCAAAGCATTGGCCACATACTATTTTGGATCCGAAGAAGCCATGATTCGGCTTGACATGAGTGAGTTTATGGAAAGGCACACAGTCTCCAAGCTCATTGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACCGAGGCAGTTCGTCGTCGACCCTACACTGTTGTACTATTTGATGAGATTGAGAAAGCCCACCCTGATGTCTTCAACATGATGCTTCAAATCCTGGAAGATGGTAGGCTAACAGACAGTAAGGGAAGAACTGTTGACTTCAAGAACACACTACTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGCATAGGATTTGACCTCGACTATGACGAGAAAGACAGCAGTTATAACAGAATCAAGAGCTTGGTGACCGAAGAGCTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTGACAAAATTGGAGGTCAAGGAAATAGCTGATATAATGCTGAAGGAGGTGTTTGAGAGACTGAAAGTCAAAGAGATTGAGCTCTCGGTGACGGAGAGATTTAGGGAAAGAGTGGTCGACGAAGGTTATAATCCTAGTTATGGTGCCAGACCTTTAAGAAGAGCGATAATGCGACTTCTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGGGAGATTAAAGAGGGTGACTCGGTTATAGTGGATGCTGACTCTGATGGTAATGTGATTGTGCTCAATGGTAGTACCGGTGCTCCAGATTCATTATCAGACGTTCTTACTGTGTGA 2784 0.4537 MSRVLAQSINVPGLVAGQRHGGNNSKGFAKPRRSVKMMYASRTASPRVAGFSGLRTLNSLGSMLRPSQDFHSKVFSQMAISRAKTGRGSRCVTKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGAEHLLLGLLREGEGVAARVLENLGADPNNIRTQVIRMVGEGADSVGATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDQAVRNQEFEKAGELRDKEMDLKTQISALIEKNKEMNKAESEAGDEGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEDTLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSTGAPDSLSDVLTV* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0895 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 545 IPR027417 -
Psa7g0895 927 ProSitePatterns Chaperonins clpA/B signature 1. 392 404 IPR018368 GO:0005524
Psa7g0895 927 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 80 920 - -
Psa7g0895 927 Pfam AAA domain (Cdc48 subfamily) 639 813 IPR003959 GO:0005524|GO:0016887
Psa7g0895 927 Coils Coil 351 371 - -
Psa7g0895 927 Pfam C-terminal, D2-small domain, of ClpB protein 820 900 IPR019489 -
Psa7g0895 927 Pfam ATPase family associated with various cellular activities (AAA) 302 418 IPR003959 GO:0005524|GO:0016887
Psa7g0895 927 Gene3D UVR domain 506 570 - -
Psa7g0895 927 SUPERFAMILY Double Clp-N motif 98 235 IPR036628 -
Psa7g0895 927 CDD AAA 614 762 - -
Psa7g0895 927 Coils Coil 546 566 - -
Psa7g0895 927 Pfam Clp amino terminal domain, pathogenicity island component 111 163 IPR004176 -
Psa7g0895 927 Pfam Clp amino terminal domain, pathogenicity island component 187 238 IPR004176 -
Psa7g0895 927 Gene3D - 593 818 IPR027417 -
Psa7g0895 927 PANTHER ATP-DEPENDENT CLP PROTEASE 80 920 - -
Psa7g0895 927 ProSiteProfiles Clp repeat (R) domain profile. 97 239 IPR004176 -
Psa7g0895 927 CDD AAA 280 432 - -
Psa7g0895 927 SMART ClpB_D2_small_2 820 910 IPR019489 -
Psa7g0895 927 Gene3D - 247 440 IPR027417 -
Psa7g0895 927 Gene3D - 96 243 IPR036628 -
Psa7g0895 927 Gene3D - 443 586 - -
Psa7g0895 927 Gene3D - 820 917 - -
Psa7g0895 927 Pfam AAA lid domain 441 542 IPR041546 -
Psa7g0895 927 ProSiteProfiles UVR domain profile. 514 549 IPR001943 GO:0005515
Psa7g0895 927 Coils Coil 510 530 - -
Psa7g0895 927 ProSitePatterns Chaperonins clpA/B signature 2. 674 692 IPR028299 -
Psa7g0895 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 644 662 IPR001270 GO:0005524
Psa7g0895 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 689 707 IPR001270 GO:0005524
Psa7g0895 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 718 736 IPR001270 GO:0005524
Psa7g0895 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 751 765 IPR001270 GO:0005524
Psa7g0895 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 906 IPR027417 -
Psa7g0895 927 SMART AAA_5 297 437 IPR003593 -
Psa7g0895 927 SMART AAA_5 640 821 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0895 Psa-Chr7 67555264 67561471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g0895 K03696 - gmx:100804035 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0895 7 67555264 67561471 Psa7g0895 7 67555264 67561471 ECH
Psa7g0895 7 67555264 67561471 Psa5g1276 5 98403926 98411796 PCT