Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1276 ATGAATGCGGCCGGATATTCAGGAATCATGGCTAGAGTTTTGGCTCAGTCACTTAGTGTTCCTGGCCTAGTGGCTGGGCACAAGCACAGTCAACATAAGGGATCGGGAAAATCTAAGAGATCAGTCAAGACGATGTGTGCTTTGCGAACAAGCGGATTAAGAATGTCAGGTTTCTCAGGACTTCGTACTTTCAATCATTTGAATACTATGATGAGACCTGGACTGGATTTTCACTCAAAGGTATCAAAGGCAGTTTCTTCACGGCGGGCAAGGGCTAAGAGATTCATTCCTAGAGCCATGTTTGAGCGTTTCACCGAGAAAGCAATCAAAGTGATAATGCTAGCTCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTCGGAACTGAGCAGATTCTTTTGGGTCTTATTGGTGAAGGCACTGGTATCGCCGCCAAGGTTTTAAAGTCTATGGGAATCAACCTTAAAGATGCTCGTGTTGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTCGAGATTCCATTTACTCCCCGTGCAAAGCGTGTATTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTGCTTCTAGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACTTGGGCGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTTACCGCTACTGTTGGCTCAGGAAGTAGTAACAACAAAACACCAACTTTGGAGGAGTATGGAACCAATTTGACCAAGCTAGCAGAAGAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCACAGATTGAGCGTGTCACCCAAATTTTAGGCCGCCGCACCAAAAATAATCCTTGTCTTATTGGAGAGCCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCTAATGGTGATGTACCTGAAACAATCGAAGGAAAAAAGGTTATAACCCTCGATATGGGTCTGCTTGTAGCTGGAACCAAATACCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGATGATATTATACTTTTTATCGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGTGCTATTGATGCTGCTAACATTCTAAAACCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGGGCCACAACATTGGACGAATACAGGAAGCATATTGAAAAAGACCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAACCAACTGTAGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTATAGCTGCTGCGCAACTTTCGTACCAGTATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGGTTGATGAAGCTGGTTCACGAGTCCGTCTTCAACATGCACAGTTGCCAGAAGAGGCAAAAGAACTTGACAAGGAGGTCAGGAAGATTGTTAAGGAGAAAGAGGAATATGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTGCGTGATAAAGAAATGGATCTCAAGGCGCAGATCTCAGCACTTATAGAGAAAGGCAAGGAGATGAGCAAAGCAGAGACTGAGACAGCAGATGAAGGTCCCATTGTGACTGAAGTTGACATTCAACATATTGTGTCCTCCTGGACAGGCATTCCTGTTGATAAAGTCTCAGCAGATGAATCTGATCGTCTCCTCAAGATGGAAGATACTTTACACAAGCGAATCATTGGTCAGGATGAAGCAGTGCAAGCCATTAGCCGTGCTATCCGTCGAGCCCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTCGTCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCCAAACTTATTGGTTCACCTCCAGGATATGTTGGTTACACCGAAGGCGGTCAATTGACTGAAGCAGTTCGACGTCGTCCTTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAAATCCTTGAAGATGGAAGACTAACAGACAGCAAGGGTAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTTGATTTGGACTACGATGAGAAAGATAGCAGTTATAATAGAATCAAGAGCTTGGTGACTGAGGAGCTAAAACAATACTTCAGGCCAGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGACAACTCACAAAATTGGAAGTGAAGGAGATAGCAGACATAATGCTCAAGGAGGTGTTTCAAAGACTTAAGACCAAAGAAATTGAACTTCAAGTCACAGAAAGATTTAGGGACAGGGTGGTTGATGAAGGTTATAATCCTAGTTACGGAGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGATAGCATGGCTGAGAAGATGCTCGCCAGAGAGATCAAAGAGGGTGATTCTGTCATAGTGGATGTTGATTCTGATGGTAAAGTGATTGTTCTCAACGGTAGCAGCGGCACTCCAGAGTCGTTACCAGAGGCTCTTTCTATATAA 2796 0.4417 MNAAGYSGIMARVLAQSLSVPGLVAGHKHSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNTMMRPGLDFHSKVSKAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1276 931 Pfam ATPase family associated with various cellular activities (AAA) 306 422 IPR003959 GO:0005524|GO:0016887
Psa5g1276 931 ProSitePatterns Chaperonins clpA/B signature 2. 678 696 IPR028299 -
Psa5g1276 931 Pfam AAA domain (Cdc48 subfamily) 643 817 IPR003959 GO:0005524|GO:0016887
Psa5g1276 931 ProSiteProfiles Clp repeat (R) domain profile. 101 243 IPR004176 -
Psa5g1276 931 Pfam AAA lid domain 444 546 IPR041546 -
Psa5g1276 931 SMART AAA_5 644 825 IPR003593 -
Psa5g1276 931 SMART AAA_5 301 441 IPR003593 -
Psa5g1276 931 PANTHER ATP-DEPENDENT CLP PROTEASE 84 929 - -
Psa5g1276 931 Gene3D - 251 444 IPR027417 -
Psa5g1276 931 Coils Coil 514 534 - -
Psa5g1276 931 SMART ClpB_D2_small_2 824 914 IPR019489 -
Psa5g1276 931 ProSitePatterns Chaperonins clpA/B signature 1. 396 408 IPR018368 GO:0005524
Psa5g1276 931 Gene3D - 100 249 IPR036628 -
Psa5g1276 931 Gene3D - 446 590 - -
Psa5g1276 931 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 84 929 - -
Psa5g1276 931 Coils Coil 355 375 - -
Psa5g1276 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 539 IPR027417 -
Psa5g1276 931 SUPERFAMILY Double Clp-N motif 102 243 IPR036628 -
Psa5g1276 931 Pfam C-terminal, D2-small domain, of ClpB protein 824 904 IPR019489 -
Psa5g1276 931 Gene3D - 596 822 IPR027417 -
Psa5g1276 931 Gene3D UVR domain 510 574 - -
Psa5g1276 931 CDD AAA 618 766 - -
Psa5g1276 931 ProSiteProfiles UVR domain profile. 518 553 IPR001943 GO:0005515
Psa5g1276 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 912 IPR027417 -
Psa5g1276 931 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 648 666 IPR001270 GO:0005524
Psa5g1276 931 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 693 711 IPR001270 GO:0005524
Psa5g1276 931 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 722 740 IPR001270 GO:0005524
Psa5g1276 931 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 755 769 IPR001270 GO:0005524
Psa5g1276 931 Pfam Clp amino terminal domain, pathogenicity island component 191 242 IPR004176 -
Psa5g1276 931 Pfam Clp amino terminal domain, pathogenicity island component 115 167 IPR004176 -
Psa5g1276 931 Gene3D - 824 921 - -
Psa5g1276 931 CDD AAA 284 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1276 Psa-Chr5 98403926 98411796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1276 K03696 - gmx:100804035 1637.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0895 7 67555264 67561471 Psa5g1276 5 98403926 98411796 PCT