LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g4443	ATGTCTCAGGTTGCGGTCACTCGATCTATTCAAACCTCCCTCTTACGCCCCACCTCAGGATCTACACAAGACAGGTCTCAAACCTTGTTGAAGCCGGGAACTTTTTCATCCATAGTCTTTCCACCACAGGGTAACAAATCCCCCAAGCTTAGTATCAGAAACTGTCACATCAATGCGATAAAAGCCGCATCAGCTGAAGTTGTCCCTGTCTCACCTGATGATGATTTAAAGATTGAGGAGGAGTTGCAGAAGTTGCATGGTCTGCAGCAACCTGGTGATGCTTCTGGTAGAATGTGGTCTAAGCCGATAGTTAGAAGAAAGACTAAGATTGTTTGTACTATTGGTCCTTCTACTAATACGAAGGAGATGATTTGGAAGCTGGCGGAGGCTGGGATGAATGTTGCTCGTATGAATATGTCGCATGGAGATCATGCTTCTCATAAGAAAGTTATTGATTTGGTTAAAGAATATAATGCACAATCCAAAGACAATGTAATTGCAATCATGCTTGACACCAAGGGTCCTGAGGTCAGGAGTGGGGATTTACCACAACCAATTATTTTAAAACCTGGACAGGAGTTTACTTTTACTATCCAGAGTGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTACGATGATTTTGTCAATGATGTTGAAGCGGGGGACATGCTTCTTGTTGATGGTGGTATGATGTCGTTCTTGGTTAAGTCGAAGACAGCGGATTCTGTGAAATGTGAAGTTATTGATGGAGGAGAACTCGGGTCAAGGAGACATTTGAATGTTAGAGGAAAGAGTGCAACACTACCTTCCATTACTGAGAAGGATTGGGATGACATCAAATTTGGAGTCGATAATGAAGTTGATTTCTATGCCGTTTCTTTTGTTAAGGATGCACAAGTAGTTCATGAACTCAAGAATTATTTGAAAAGTTGTGGTGCTGATATACATGTAATTGTAAAAATTGAAAGTGCAGACTCGATACCAAACTTGCATTCAATTATTACCGCGTCTGATGGGGCTATGGTTGCAAGAGGAGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCGCTTTTGCAGGAAGAGATAATTCGGATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAATATGCTCGAAAGCATGATTGTTCACCCGACACCAACCAGAGCAGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCCGATGGAATCATGCTTTCTGGAGAAACTGCTCACGGAAAGTTTCCAATAAAAGCTGCGAAAGTAATGCACACGGTAGCATTGCGGACAGAAGCCTCTTTATCAAGTGGTCAAATCCCACCTAATATTGGTCAAGTATTCAAGAACCACATGAGCGAGATGTTTGCATACCATGCAACCATGATATCTAATACTCTTGGAACATCGACGGTTGTCTTCACTAGATCGGGTTTCATGGCTATTCTGTTGAGCCATTATCGACCTTCTGGCACCATATTTGCTTTTACTGATGAGAAAAGAGTACAACAAAGGCTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGCAATTCTCTGAGGATTCTGAAGAGACATTCACAAAAGCCTTGGATTTGTTGCAGAAGAATGGAATGGTTAAAGAAGGAGAAGAAGTAGCGCTTGTACAAAGTGGAAGGCAACCCATTTGGAGGTTCCACTCCACTCACAATATCCAGGTCCGAACCGTAGCCAACACAAATTAA	1740	0.4241	MSQVAVTRSIQTSLLRPTSGSTQDRSQTLLKPGTFSSIVFPPQGNKSPKLSIRNCHINAIKAASAEVVPVSPDDDLKIEEELQKLHGLQQPGDASGRMWSKPIVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARMNMSHGDHASHKKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIILKPGQEFTFTIQSGVGTADCVSVNYDDFVNDVEAGDMLLVDGGMMSFLVKSKTADSVKCEVIDGGELGSRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPIKAAKVMHTVALRTEASLSSGQIPPNIGQVFKNHMSEMFAYHATMISNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPIYMQFSEDSEETFTKALDLLQKNGMVKEGEEVALVQSGRQPIWRFHSTHNIQVRTVANTN*	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g4443	579	SUPERFAMILY	PK beta-barrel domain-like	175	266	IPR011037	-
	Psa6g4443	579	Pfam	Pyruvate kinase, alpha/beta domain	464	555	IPR015795	-
	Psa6g4443	579	TIGRFAM	pyruv_kin: pyruvate kinase	106	575	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	ProSitePatterns	Pyruvate kinase active site signature.	316	328	IPR018209	GO:0004743\|GO:0006096
	Psa6g4443	579	Gene3D	-	108	433	IPR040442	-
	Psa6g4443	579	Gene3D	-	176	269	IPR015806	GO:0004743\|GO:0006096
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	164	180	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	288	302	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	318	344	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	345	369	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	370	394	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	395	413	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PRINTS	Pyruvate kinase family signature	414	430	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PANTHER	PYRUVATE KINASE	48	575	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	PANTHER	PLASTIDIAL PYRUVATE KINASE 2	48	575	-	-
	Psa6g4443	579	Gene3D	-	448	576	IPR036918	-
	Psa6g4443	579	SUPERFAMILY	PK C-terminal domain-like	425	575	IPR036918	-
	Psa6g4443	579	Pfam	Pyruvate kinase, barrel domain	106	442	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Psa6g4443	579	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	99	439	IPR015813	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g4443	Psa-Chr6	390696078	390702984	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g4443	K00873		-	gmx:100818193	991.875

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g4443	6	390696078	390702984	Psa6g4443	6	390696078	390702984	ECH
	Psa1g2204	1	167383592	167388524	Psa6g4443	6	390696078	390702984	PCT