Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3849 ATGACGGGACTTGTCATGGTTACCAGAGGCGGTGGTTGCGGCGGAGGAAGTAAGAGAACACGAGCAGCACGAGCGGCCGAAGAAGAAGAGGAACAACAGAACCAGCTTTCACTTGTGGCGTTGCTTTTAGCTGCGATTAGGAAATCTATGGTGGCATGCCGAGTAGAGAGGCCTGATGAAGTGATTTCAACCGTTCATCAAATGGAGATCGGATGGCCGACGGATGTTCAGCATATTACGCATGTTACGTTTGATCGGTTTAATGGTTTTCTTGGGCTTCCTGTTGAGTTTGAAGTTGAGATCCCTGGTCGTGTTCCCAGTGCTAGTGTAAGTGTGTTTGGAGTCTCAGCAGAATCTATGCAGTGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTCATGTTAATGCAGGATCGTTTATATTCACAGGGAGGATTGAAGGCTGAAGGTATATTTCGCATAAACCCAGAAAATAGTAAAGAGGAGCATGTGAGAAACCAGTTGAATAGTGGTATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTGATCAAAGCGTGGTTCCGCGAGCTTCCTTCCGGAGTGCTAGATGGTCTTTCCCCTGAACAAGTTCTTCAATGCAACACAGAAGAAGAATCTTTTGAGCTTGTGAAGCAGCTTAAACCAACCGAGTCAGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTCCAAGAAGAGGAATATAACAAAATGAATGCGAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACTGCGCTAATGCATGCGGTTCAAGTGATGAACTTGCTAAAGACGTTGATAATGAAGACCCTTAGGGAGCGTGAAGAAACAGCCACAGGTGGATATTCACCCATGTCATTTCGCACATCATTTCGCCGGTCAGAGGACGAATACGACAGTCAGCGAGAAACAGCAACGTGTGGATATTCACCCATGTCCTTTCGCTCATCGTATCGTCCATCTGAGGATGAATATGACAGTCAACTAGAAATAGAAGCAAGCGGTGAATTGAAAGGGGCCAAATCAGATTTCAATGATCACACTCATTACAGAAATAGCAGCGAAGAGGAATTGGAGGCTGAATCTCTGAGCGAGATAGAAGAATGTTTCTTAAAACAGTTGGACGAGAACGTGAATACCAAAGAATTCTCAGAAGAATCTGTAGATTATTTTCAAGAGTGTGTGAGCTCCAAAAGCTGCTGCGACTATAGTGCAGAACCGGCTTTATCAATTACTGATAACAAAACTGTTCATTCATGCGTGAGTTCTGACAAAGAAAAGATAAATGCTGACGTAATCATTCCGTTACTAGGGTGGACAGACACAGATGATGTGGAGATGGTTGACAAATTCACAGACTCAGTTTCGCCAGTGCCGCTGCTTGCATCTAGCTAA 1458 0.4458 MTGLVMVTRGGGCGGGSKRTRAARAAEEEEEQQNQLSLVALLLAAIRKSMVACRVERPDEVISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESFELVKQLKPTESALLSWAIDLMADVVQEEEYNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSFRTSFRRSEDEYDSQRETATCGYSPMSFRSSYRPSEDEYDSQLEIEASGELKGAKSDFNDHTHYRNSSEEELEAESLSEIEECFLKQLDENVNTKEFSEESVDYFQECVSSKSCCDYSAEPALSITDNKTVHSCVSSDKEKINADVIIPLLGWTDTDDVEMVDKFTDSVSPVPLLASS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3849 485 CDD CRIB 68 108 - -
Psa6g3849 485 Gene3D CRIB domain 65 101 IPR036936 -
Psa6g3849 485 SMART PBD_5 70 104 IPR000095 -
Psa6g3849 485 Gene3D Rho GTPase activation protein 102 296 IPR008936 GO:0007165
Psa6g3849 485 SUPERFAMILY GTPase activation domain, GAP 111 289 IPR008936 GO:0007165
Psa6g3849 485 Pfam RhoGAP domain 132 266 IPR000198 GO:0007165
Psa6g3849 485 Pfam P21-Rho-binding domain 69 98 IPR000095 -
Psa6g3849 485 SMART RhoGAP_3 129 292 IPR000198 GO:0007165
Psa6g3849 485 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 329 - -
Psa6g3849 485 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 328 453 - -
Psa6g3849 485 PANTHER MKIAA1688 PROTEIN 328 453 IPR044785 GO:0005096
Psa6g3849 485 PANTHER MKIAA1688 PROTEIN 1 329 IPR044785 GO:0005096
Psa6g3849 485 CDD RhoGAP 132 288 - -
Psa6g3849 485 ProSiteProfiles Rho GTPase-activating proteins domain profile. 115 296 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3849 Psa-Chr6 334756126 334759391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3849 - - mtr:MTR_1g089500 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3849 6 334756126 334759391 Psa6g3849 6 334756126 334759391 ECH
Psa3g0595 3 53624201 53626816 Psa6g3849 6 334756126 334759391 PCT