Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3646 ATGAGTACACTTTCAACTCTGGTGAATTTGTTTTTGCTACTTGCATTGATTGGTTGTAGCTCATGGACAGTTCGGAGCAGCTCAAGCTGCAAACATATAAACATTAACGAAGTTCGACCACACAGCGTCAGTATTACCGAATTCGGGGCAGTTGGCGATGGGATCACTCTCAATACAAAGGCCTTTCGGAATGCCATCTTCTATCTAAATTCATATGCCGACAAAGGTGGAGCCAAGCTTTTCGTCCCTGCTGGCCAGTGGTTAACCGGTAGTTTTGATCTCATCAGCCATCTGACTTTGTCGTTGGACAAGGATGCTGTAATTCTTGGATCAACGAACTCTGAAGATTGGCCGGTTGTGGATCCTCTACCATCATATGGTAGGGGAAGGGAGTTGCCGGGTAGACGGCATAGAAGCCTTATTTACGGGCACAATTTAACTGATGTTATCATTACAGGTGACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAATTTCGTAACAAAACATTGGATCATACACGCCCTCATTTAGTCGAGTTGATGAATTCAACGGAGGTTCTCATTTCAAATTTAACCTTTTTGAATTCACCATTCTGGACTATTCATCCTGTATATTGCAGACATGTTATAGTTCAGAATGTCACAATCCTTGCCCCTCTTAGTTCACCAAATACAGATGGGATTGATCCAGATTCTTCCAATGATGTATGCATTGAAGACTGTTATATAAGCACCGGGGATGATCTCATTTCGATCAAAAGTGGATGGGATGAATACGGAATTTCTTTTGGTCGACCAAGTACAAACATTATCATCCGCAGGCTCACTGGAAGGACAACGAGTGCCGGAATCTCTATTGGAAGTGAGATGTCTGGAGGTGTTTCAGAAGTTCATGCAGAAGATATTAATATTTTTGATTCACGTAGTGCAATTAGAATAAAGACTTCACCCGGCAGAGGCGGTTACGTTAAAAATGTCTACATCTCTAACATGACATTGGTTAACATAGATATTGCTATTAGGTTCTCTGGTTTATACGGAGAGCATCCGGATGACGCGTATGATCCAGATGCTCTACCTGTGATAGAAAGGATTACAATCAAAGATGTGATTGGAAAAAACATCAAACGTGCGGGCCTTATACAAGGTATTAGAGGTGACAACTTTGTCAATATTTGTCTATCGAACATCACTCTTAATGTAAGCAAGAAAAAACCATGGAACTGCTCGAACGTTAAAGGATACTCTGAGTTGGTTTCTCCGGAAGCTTGCGTGCAACTCAATGAGAGAATATTCCCCGATCATTTTTCAGACTGTTATCAGTTACCAGATCTCGTTAGGAGTTCGAGTAGTCGCAACAGGGCTGCTTGGTTGCTGTCTTGGTAG 1398 0.4206 MSTLSTLVNLFLLLALIGCSSWTVRSSSSCKHININEVRPHSVSITEFGAVGDGITLNTKAFRNAIFYLNSYADKGGAKLFVPAGQWLTGSFDLISHLTLSLDKDAVILGSTNSEDWPVVDPLPSYGRGRELPGRRHRSLIYGHNLTDVIITGDNGTIDGQGSIWWDKFRNKTLDHTRPHLVELMNSTEVLISNLTFLNSPFWTIHPVYCRHVIVQNVTILAPLSSPNTDGIDPDSSNDVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIRRLTGRTTSAGISIGSEMSGGVSEVHAEDINIFDSRSAIRIKTSPGRGGYVKNVYISNMTLVNIDIAIRFSGLYGEHPDDAYDPDALPVIERITIKDVIGKNIKRAGLIQGIRGDNFVNICLSNITLNVSKKKPWNCSNVKGYSELVSPEACVQLNERIFPDHFSDCYQLPDLVRSSSSRNRAAWLLSW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3646 465 PANTHER OS07G0245200 PROTEIN 10 450 - -
Psa6g3646 465 PANTHER PECTIN LYASE-RELATED 10 450 - -
Psa6g3646 465 SMART pbh1 210 236 IPR006626 -
Psa6g3646 465 SMART pbh1 298 319 IPR006626 -
Psa6g3646 465 SMART pbh1 327 348 IPR006626 -
Psa6g3646 465 SMART pbh1 271 292 IPR006626 -
Psa6g3646 465 SMART pbh1 237 269 IPR006626 -
Psa6g3646 465 Pfam Glycosyl hydrolases family 28 134 417 IPR000743 GO:0004650|GO:0005975
Psa6g3646 465 Gene3D - 22 425 IPR012334 -
Psa6g3646 465 SUPERFAMILY Pectin lyase-like 36 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3646 Psa-Chr6 315704973 315707917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3646 10 465 Glycoside Hydrolase AT3G62110 69.397 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3646 - - mtr:MTR_1g086030 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0387 3 36606797 36610835 Psa6g3646 6 315704973 315707917 PCT