Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0387 ATGAGGAGGTTTTCATCTGTAACTGTTGTGGAAGTGTTTCTGGTACTTGCATTGTTGTGTTGTAGCTCATGGAAAGTGTGGAGCATCACACTTTGCAAAGAGACAAACTTGGACAAAGTTAGGCCTCATAGTGTCAGTATTACTGAATTCGGTGCTGTTGGAGACGGGATCACTCTCAACACGAAAGCGTTTCAGAATGCGATTTTCTACCTAAATTCTTTCTCAGATAAAGGTGGAGCTAAGCTTTTTGTTCCAGCTGGTCGGTGGTTAACCGGTAGCTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGATAAGGATGCAGTAATTCTTGGATCAACGAACTCTGAGGATTGGCCGGTTGTTGAGCCTCTACCGTCTTATGGACGAGGACGCGAGTTGCCAGGTGCAAGGCATAGGAGCCTAATCTATGGAAGCAATTTGACTGATGTTATCATAACAGGTAATGAGGGGATTATCGATGGTCAAGGGAGTATCTGGTGGAGCAAGTTTAGGAACAAGACTCTGGATTATACGCGTCCCCATTTGGTAGAATTGATGAATTCGACCGGGATACTCATTTCAAATTTAACCTTCTTGAATTCTCCGTTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAACGTGACAATTCTTGCTCCTCTTGATTCACCAAACACCGACGGGATTGATCCAGACTCGTCCGATGACGTATGCATCGAAGACTGTTATATAAGTACTGGCGATGATCTGATCGCCATCAAAAGTGGGTGGGATGAGTATGGAATTGCATTTGGTCGTCCCAGCACAAATATCATCATCCACAGACTGGTCGGGAAAACTCAAGTAAGCGCAGGAATTGCTATCGGAAGTGAGATGTCGGGCGGTGTATCAAACGTTCACGCTCAAGATATCCGCTTTTACGATTCATATACAGCAATCAGAATAAAGACTTCACCAGGCAGAGGTGGTTATGTTAGAAACATCTATGTCTCTAACATGACATTGACTAATGTTGATATCGCAATCAGGTTCACCGGTTTATATGGCGACCATCCAGACGATGGTTATGACCCAAATGCTCTACCGGTAATCGAAAAGATTACAATCGAGGACGTGAAAGGAGAAAATGTTAAAAAAGCGGGTCTTATAGAAGGTATAGAAGGCGACAGTTTCGTCGATATCTGCTTATCAAACATAAACCTTAATGTAAGCTCAAACTATCCATGGAACTGCTCTAATGTTAGAGGCTACTCTGACACGGTTTTGCCGGAACCTTGTGAGCCGCTCACGGAGAGAATATTCCCCGACCATTGTTCAGACTGTTACTATTTGTCGAATCACCGAGAAAGTTCAAATGATAAAAAAAGCGATGGTTGGTTTACGTCTTGGTGA 1407 0.4328 MRRFSSVTVVEVFLVLALLCCSSWKVWSITLCKETNLDKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSEDWPVVEPLPSYGRGRELPGARHRSLIYGSNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELMNSTGILISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLVGKTQVSAGIAIGSEMSGGVSNVHAQDIRFYDSYTAIRIKTSPGRGGYVRNIYVSNMTLTNVDIAIRFTGLYGDHPDDGYDPNALPVIEKITIEDVKGENVKKAGLIEGIEGDSFVDICLSNINLNVSSNYPWNCSNVRGYSDTVLPEPCEPLTERIFPDHCSDCYYLSNHRESSNDKKSDGWFTSW* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0387 468 Gene3D - 25 425 IPR012334 -
Psa3g0387 468 PANTHER OS07G0245200 PROTEIN 9 450 - -
Psa3g0387 468 PANTHER PECTIN LYASE-RELATED 9 450 - -
Psa3g0387 468 SMART pbh1 301 322 IPR006626 -
Psa3g0387 468 SMART pbh1 330 351 IPR006626 -
Psa3g0387 468 SMART pbh1 273 295 IPR006626 -
Psa3g0387 468 SMART pbh1 212 238 IPR006626 -
Psa3g0387 468 SMART pbh1 239 271 IPR006626 -
Psa3g0387 468 Pfam Glycosyl hydrolases family 28 140 420 IPR000743 GO:0004650|GO:0005975
Psa3g0387 468 SUPERFAMILY Pectin lyase-like 36 435 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0387 Psa-Chr3 36606797 36610835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0387 32 468 Glycoside Hydrolase AT3G62110 69.977 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0387 - - gmx:100782602 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0387 3 36606797 36610835 Psa3g0387 3 36606797 36610835 ECH
Psa3g0387 3 36606797 36610835 Psa6g3646 6 315704973 315707917 PCT