Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2720 ATGTCTAACACTACAAAGGTTTTGGATCCTGCATTCCATGGAGTGGGTCAAAGATTAGGAACTGAAATATGGAGGATTGAGAATTTTCAACCGGTTCCATTGCCCAAATCTGAATATGGGAAATTCTACATGGGAGATTCATACATCGTCTTGCAGACGTCACAAGGAAAAGGAGGTGCTTATTTTTATGATTTACACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAGCCGCCATTAAAGCTGTTGAACTTGACACAGCTCTTGGAGGACGAGCTGTGCAACACAGAGAGATTCAAGGACACGAGTCTGACAATTTTTTGTCATATTTTAGGCCATGTATTATACCATTAGAGGGGGGTGTTGCATCTGGATTTAGAAAACCTGAAGAGGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGGAAAAGAGTTGTCAGATTGAAACAGGTCCCGTTTGCAAGGTCTTCATTGAACCATGATGATGTGTTCATTCTTGACACCGATAGTAAGATTTATCAATTCAATGGTGCAAATTCCAACATTCAGGAAAGAGCCAAGGCTTTGGAAATTATAGAGTTTCTGAAAGAAAAATATCATGAAGGGAAATGTGATGTTGCAATTGTTGATGATGGAAAGTTAGACACTGAGTCAGATTCAGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGCAAAAAAGGTAATCAGTGAGGATGATATCATTCCAGAGGCAATTCCTGCTCAGCTGTATAGTATCATTAATGGTGAAGTCAAGTCCATGGAAGATGAACTTTCTAAATCACTTTTGGAGAACAACAGATGCTATTTACTGGACTGTGGTGCTGAGATATTTATTTGGTTTGGCCGGGTAACACAAGTGGAAGAACGAAAAGCAGCTTGCCAGACAGCTGAGGAGTTTGTTTCAAGCCAAAACAGACCAAAATCTACAAGGATAACAAGGATTACTCAAGGTTATGAGACACGTTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTGGTCCTGTCACCGATGAGGGAAAGGGAAAAGTTACAGCATTGCTAAAGCAACAAGGGATGGGTGTCAAAGGAATGACAAAAAGTACCCCAGTAAATGAGGAAATTCCACATTTGCTTGAAGAAGGTGGAAAGATGGAGGTATGGAGAATCAATGAAAGTGCTAAGACCTCATTGCCGAAGGAGGATATTGGCAAATTTCATAGTGGAGATTGTTACATTGTACTGTACACATACCATTCTGGTGAGAGGAAAGAAGATTACTTCTTGTGCTGCTGGTTTGGCAAAGACAGCATTGAGGAGGACCAAACGCTGGCTTTGAAATTGGCTAATACAATGTCCAACTCATTGAAGGGTAGACCTGTTCAGGGTCGCATATTCGAAGGTAAAGAGTCACCACAATTTGTTGCTCTTTTCCAACCCATGGTAGTCCTTAAGGGAGGTTTGAGCACTGGATATAAAGGATTTGTAGCAGAAAAAGGTTTATCAGATGAGACATACACCGAAGAATCTACCGCGCTTATCCGAATTTCTGGAACTTCCATCCATAACAATAAAGCAGTGCAAGTTGATGCAGTGCCATCGTCATTGAATTCTACCGAATGTTTTGTCCTGCAATCTGGCTCTACAATTTTCACTTGGCATGGCAATCAGTGTTCCATTGAACAGCAGCAGCTAGCAGCAAAGGTCGCAGAATTTCTAAGACCAGGAGTTGCTTTAAAGCATGCTAAAGAAGGTACAGAAAACTCAGCTTTCTGGCTTCCACTAGGAGGAAAACAAAGTTACACTAGCAAGAAAGTTACTAATGAGGTTATCAGAGATCCACATCTATTCACCTACTCATTGTATAAAGGAAAGTTACATGTAGAGGAGGTTTACAACTTCTCCCAAGATGATTTGTTAACAGAGGATATCCACATACTGGACACACATGCAGAAGTGTTTGTTTGGATTGGTCAGTGTGTTGACTCAAAAGAAAAGCAAAACGTTTTTGAAATTGGCCAGAAATACATAGATGTGGCTGCATCTCTGGAGGGACTATCTCCACGAGTACCCTTATATAAAGTAACAGAAGGGAATGAACCTTTCTTTTTCACAACATACTTTTCATGGGATTGGGATCATTCAAGAGCTAAGGTATACGGCAACTCCTTCCAGAAAAACGTCACATTACTCTTCGGAACTGGCCAAGCAGTGGAGGAAAAATCAAATGGGTCAGGTGGACCAAGACAAAGGGCAGAAGCTTTGGCTGCTTTATCTTCTGCTTTTAGCTCATCGTCTATGAAAACGAGTAGGTCACAGGAGAGATTGAATGGGTTAGACCATGGAGGACCAAGACAAAGAGCGGAAGCTTTAGCTGCTTTAAACTCTGCATTTAATTCTTCATCAACGACGAAGAGAGTTGCTCCTAGGCCACCTGGAAAAGGTCAAGGATCGCAAAGAGCAGCCGCCTTGGCTGCTCTTTCATCAGTTCTTACTGCTGAAAAGAACAAACAATCACCTGATTCATCTCCTGAGGCAAGCCACAGTCCTTTCCCAGAGAGTGGCACTTTTGATGTTAAAAGTGGAAGTGAATATTCTGAAGTTGATGAAACTACTGAAGCCAAGGAAATGGAAGAAGTTGCCCCGGAATCTGAATCTGGTAGCAATGAGGGTCTGGAATCTAGTCAAGAAAATGTGGAGGATGAAAATAATGACCAGAGTAGTCAAAGGACCTTCAGTTATGATCAGTTAAAGACTGCGTCTGGCAAAAATGTGCCTGGAATTGACCTTGAACGGCGAGAGGCTTATCTGTCAGACGAAGAATTCCAGACTGTATTTGGAATGGTAAAAGAAGCATTTTATAAATTGCCAAAATGGAAGAAAGACATGCTGAAAAAGAAATTTGAATTGTTCTAG 2943 0.4145 MSNTTKVLDPAFHGVGQRLGTEIWRIENFQPVPLPKSEYGKFYMGDSYIVLQTSQGKGGAYFYDLHFWIGKDTSQDEAGTAAIKAVELDTALGGRAVQHREIQGHESDNFLSYFRPCIIPLEGGVASGFRKPEEEEFETRLYVCRGKRVVRLKQVPFARSSLNHDDVFILDTDSKIYQFNGANSNIQERAKALEIIEFLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIAKKVISEDDIIPEAIPAQLYSIINGEVKSMEDELSKSLLENNRCYLLDCGAEIFIWFGRVTQVEERKAACQTAEEFVSSQNRPKSTRITRITQGYETRSFKSNFDSWPSGSAGPVTDEGKGKVTALLKQQGMGVKGMTKSTPVNEEIPHLLEEGGKMEVWRINESAKTSLPKEDIGKFHSGDCYIVLYTYHSGERKEDYFLCCWFGKDSIEEDQTLALKLANTMSNSLKGRPVQGRIFEGKESPQFVALFQPMVVLKGGLSTGYKGFVAEKGLSDETYTEESTALIRISGTSIHNNKAVQVDAVPSSLNSTECFVLQSGSTIFTWHGNQCSIEQQQLAAKVAEFLRPGVALKHAKEGTENSAFWLPLGGKQSYTSKKVTNEVIRDPHLFTYSLYKGKLHVEEVYNFSQDDLLTEDIHILDTHAEVFVWIGQCVDSKEKQNVFEIGQKYIDVAASLEGLSPRVPLYKVTEGNEPFFFTTYFSWDWDHSRAKVYGNSFQKNVTLLFGTGQAVEEKSNGSGGPRQRAEALAALSSAFSSSSMKTSRSQERLNGLDHGGPRQRAEALAALNSAFNSSSTTKRVAPRPPGKGQGSQRAAALAALSSVLTAEKNKQSPDSSPEASHSPFPESGTFDVKSGSEYSEVDETTEAKEMEEVAPESESGSNEGLESSQENVEDENNDQSSQRTFSYDQLKTASGKNVPGIDLERREAYLSDEEFQTVFGMVKEAFYKLPKWKKDMLKKKFELF* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2720 980 SUPERFAMILY Actin depolymerizing proteins 596 718 - -
Psa6g2720 980 CDD gelsolin_S3_like 268 343 - -
Psa6g2720 980 Pfam Gelsolin repeat 532 583 IPR007123 -
Psa6g2720 980 Pfam Gelsolin repeat 269 337 IPR007123 -
Psa6g2720 980 Pfam Gelsolin repeat 150 217 IPR007123 -
Psa6g2720 980 Pfam Gelsolin repeat 29 111 IPR007123 -
Psa6g2720 980 Pfam Gelsolin repeat 639 710 IPR007123 -
Psa6g2720 980 Pfam Gelsolin repeat 408 483 IPR007123 -
Psa6g2720 980 SMART VILL_6 252 344 IPR007122 GO:0051015
Psa6g2720 980 SMART VILL_6 624 719 IPR007122 GO:0051015
Psa6g2720 980 SMART VILL_6 518 607 IPR007122 GO:0051015
Psa6g2720 980 SMART VILL_6 19 117 IPR007122 GO:0051015
Psa6g2720 980 SMART VILL_6 139 234 IPR007122 GO:0051015
Psa6g2720 980 SMART VILL_6 392 490 IPR007122 GO:0051015
Psa6g2720 980 PANTHER VILLIN-3-LIKE ISOFORM X1 1 980 - -
Psa6g2720 980 SMART VHP_1 945 980 IPR003128 GO:0003779|GO:0007010
Psa6g2720 980 Gene3D Severin 614 735 IPR029006 -
Psa6g2720 980 CDD gelsolin_S6_like 622 722 - -
Psa6g2720 980 MobiDBLite consensus disorder prediction 840 870 - -
Psa6g2720 980 CDD gelsolin_S4_like 386 487 - -
Psa6g2720 980 SUPERFAMILY Actin depolymerizing proteins 510 615 - -
Psa6g2720 980 MobiDBLite consensus disorder prediction 910 929 - -
Psa6g2720 980 SUPERFAMILY Actin depolymerizing proteins 223 353 - -
Psa6g2720 980 ProSiteProfiles Headpiece (HP) domain profile. 915 980 IPR003128 GO:0003779|GO:0007010
Psa6g2720 980 MobiDBLite consensus disorder prediction 772 793 - -
Psa6g2720 980 Gene3D Severin 520 613 IPR029006 -
Psa6g2720 980 Gene3D Villin headpiece domain 902 980 IPR036886 GO:0003779|GO:0007010
Psa6g2720 980 Coils Coil 898 918 - -
Psa6g2720 980 SUPERFAMILY Actin depolymerizing proteins 9 148 - -
Psa6g2720 980 Gene3D Severin 253 350 IPR029006 -
Psa6g2720 980 CDD gelsolin_S5_like 519 609 - -
Psa6g2720 980 MobiDBLite consensus disorder prediction 805 938 - -
Psa6g2720 980 MobiDBLite consensus disorder prediction 872 891 - -
Psa6g2720 980 Gene3D Severin 6 132 IPR029006 -
Psa6g2720 980 SUPERFAMILY Actin depolymerizing proteins 383 528 - -
Psa6g2720 980 SUPERFAMILY Actin depolymerizing proteins 134 241 - -
Psa6g2720 980 CDD gelsolin_S1_like 12 124 - -
Psa6g2720 980 Gene3D Severin 133 246 IPR029006 -
Psa6g2720 980 CDD gelsolin_S2_like 138 232 - -
Psa6g2720 980 Gene3D Severin 386 519 IPR029006 -
Psa6g2720 980 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 533 553 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 593 612 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Psa6g2720 980 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Psa6g2720 980 PANTHER VILLIN 1 980 IPR007122 GO:0051015
Psa6g2720 980 Pfam Villin headpiece domain 945 980 IPR003128 GO:0003779|GO:0007010
Psa6g2720 980 SUPERFAMILY VHP, Villin headpiece domain 911 980 IPR036886 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2720 Psa-Chr6 211549296 211570872 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2720 - - gmx:100788765 1535.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1700 3 151299936 151310745 Psa6g2720 6 211549296 211570872 PCT