Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2653 ATGGGTGTGGTTAGTAATTCAGACTCAAATGGATCTGTTCAAAATTGCAATGGTTTAGAAGAGAAGCTTGATGATCTCCGTGGCCTTCTTGGTAAGGCTAATGGTGATCCATTGAGGATTGTTAGTGTAGGAGCTGGTGCTTGGGGGAGTGTTTTTGCAGCGTTGTTGCAAGACAGTTATGGTCAGTTTCGCGAGAAGGTACAAATCAGGATATGGAGGAGACCATTAAAGATTGTTGATAAAGCCACTGCCAAGCACTTATTTGAAGTTATCAACTCCAGGGAAGATGTGTTGAGGAGGTTGATTCGGCGTTGCGCTTATTTGAAATATGTTGAGGCAAGGCTTGGTGATAGGACATTATTTGCCGATGAGATTCTCAAAGATGGTTTTTGTTTGAATATGATTGATACACCGATTTGTCCTTTGAAGGTTGTCACAAACTTGCAGGAAGCTGTTTGGGATGCAGATATTGTTGTCAATGGATTGCCTTCGACCGAAACAAGGGAGATTTTTGAAGAGATTAGTAAATATTGGAAGGAGAGAATCACAGTTCCTGTAATTATCTCTTTGTCAAAGGGCATAGAGGCGGCATTGGAGCCTGTTCCGCATATTATAACTCCAACAAAAATGATTCACAAAGCAACTGGAGTTCCCATGGAGAACATACTTTATCTTGGTGGTCCAAATATTGCATCAGAAATCTACCACAAGGAGTATGCAAATGCTAGAATATGTGGCGCTGAGAAATGGAGGAAGGCTCTGGCAAAGTTTCTGAGACAACCACATTTTATTGTTTGGGACAATAGTGACCTTGTTACCCATGAGGTCATGGGTGGTTTGAAAAATGTTTATGCAATTGGTGCTGGAATGGTAGCAGCCCTTACCAATGAGAGTGCTACTAGCAAATCTGTATATTTTGCACACTGTACATCAGAGATGATATTTATCACTCACTTGTTGGCTGAAGAACCTGAAAAGCTCGCAGGACCATTATTGGCGGATACTTATGTGACATTGTTGAAAGGTCGTAATGCATGGTATGGCCAGATGCTAGCTAAGGGTGAGCTAAGTCCAGACATGGGTGACAGCATAAGAGGCAAAGGAATGATTCAGGTATTATTAGAGTTTTTCCTACTTCTTAGTTGGTTCTATACATATATGCTAAATTTCCAACACATGCCAATTGCATTTTTGGATTGTATAAACCGTATAATATGCATAAAAATGTCGATTATGTGTTAG 1242 0.405 MGVVSNSDSNGSVQNCNGLEEKLDDLRGLLGKANGDPLRIVSVGAGAWGSVFAALLQDSYGQFREKVQIRIWRRPLKIVDKATAKHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDTPICPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITVPVIISLSKGIEAALEPVPHIITPTKMIHKATGVPMENILYLGGPNIASEIYHKEYANARICGAEKWRKALAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIRGKGMIQVLLEFFLLLSWFYTYMLNFQHMPIAFLDCINRIICIKMSIMC* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2653 413 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 270 362 IPR006109 GO:0004367|GO:0005975
Psa6g2653 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 270 IPR036291 -
Psa6g2653 413 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 142 244 IPR011128 GO:0016616|GO:0046168|GO:0051287
Psa6g2653 413 Gene3D - 270 411 IPR013328 GO:0016491
Psa6g2653 413 Gene3D - 21 101 - -
Psa6g2653 413 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] GPDHC1, CYTOSOLIC 6 373 - -
Psa6g2653 413 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 6 373 - -
Psa6g2653 413 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 42 59 IPR006168 GO:0004367|GO:0006072|GO:0009331
Psa6g2653 413 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 263 287 IPR006168 GO:0004367|GO:0006072|GO:0009331
Psa6g2653 413 PIRSF Glycerol-3-P_dh 32 405 IPR006168 GO:0004367|GO:0006072|GO:0009331
Psa6g2653 413 Gene3D - 133 266 - -
Psa6g2653 413 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 270 364 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2653 Psa-Chr6 204610239 204614362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2653 9 371 Acyl Lipid Metabolism Gene Families AT2G41540 88.462 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2653 K00006 - gmx:100797552 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1738 3 154226419 154228952 Psa6g2653 6 204610239 204614362 PCT