Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1717 ATGGCTTTTCAACCCATGTTTCTCTTTTCTATTTTATTCTTTATTGTTCCTCCAAACAATGCCTACTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAAATCAAGCCTATGAGTTTCTACAAAGGCTATAGAAACCTTTGGGGACCTCAACATCAATACATGGATCAACATGCATTAACAATTTGGCTTGACAGAACCTCGGGTAGTGGATTCAAGTCGGTTCGACCATTTCGATCCGGATACTTCGGTGCTTCAATTAAGCTTCATCCTGGCTACACTGCAGGAGTTATAACAGCTTTTTATCTCTCTAACAGTGAAGCACATCCAGGATTTCATGATGAGGTAGACATTGAGTTTCTAGGAACAACATTTGGAAAGCCTTATACTTTGCAGACAAATGTTTATATAAGAGGAAGTGGTGATGGCAAAATTATAGGCAGAGAAATGAAGTTTCATTTATGGTTTGATCCTACCAAAAAATTTCATCACTATGCTATACTATGGAATCCTAAGGAAATAATATTCTTAGTGGATGATGTGCCCATAAGGAGGTACCCAAGGAAAAGTGATGCAACATTTCCACTAAGACCAATGTGGGTTTATGGTTCAATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAGTACCAACCTTTTGTTGCAAAGTACACCAATTTCAAGGCCAGTGGTTGCTCAGCTTACGCGTCGCGTTGGTGCCGTCCAGCCTCGGCCTCGCCGTATCGGTCCGGCGGGTTGACCCGACAACAACATTGGGCTATGAGTTGGGTTCAAAGACGCCACATGGTTTATAACTATTGCCAAGATTCCAAAAGAGATCATAGACTAACACCTGAATGTTGGGGTTAA 891 0.4186 MAFQPMFLFSILFFIVPPNNAYWPPSPGYWPSSKIKPMSFYKGYRNLWGPQHQYMDQHALTIWLDRTSGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNSEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKKFHHYAILWNPKEIIFLVDDVPIRRYPRKSDATFPLRPMWVYGSIWDASSWATEDGKYKADYKYQPFVAKYTNFKASGCSAYASRWCRPASASPYRSGGLTRQQHWAMSWVQRRHMVYNYCQDSKRDHRLTPECWG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1717 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 253 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Psa6g1717 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 6 295 - -
Psa6g1717 296 Gene3D - 20 294 - -
Psa6g1717 296 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
Psa6g1717 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 282 IPR013320 -
Psa6g1717 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 10 231 IPR000757 GO:0004553|GO:0005975
Psa6g1717 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 295 IPR044791 GO:0004553
Psa6g1717 296 PIRSF EndGlu_transf 9 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1717 Psa-Chr6 96532359 96534399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1717 1 294 Glycoside Hydrolase AT3G44990 64.286 7.00e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1717 K08235 - gmx:100796698 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1717 6 96532359 96534399 Psa6g1717 6 96532359 96534399 ECH
Psa3g0979 3 91617889 91620495 Psa6g1717 6 96532359 96534399 PCT