Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0979 ATGGCTCTTTTTCTCTTTGCTATTTTTATCTTAATGCCATCTTTAACCAATGCTTATTGGCCACCTTCACCTGGTTACTGGCCAAGCTCAAAGTTTCAGTCTATGAGTTTTTACAAAGGTTTTACAAATCTTTGGGGACCCCAGCACCAAACACTAGAACAAAATGGATTGACAATTTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCGGTTCGTCCGTTCCGATCCGGATATTTCGGTGCTTCCATTAAGCTTCAACCTGGTTATACTGCAGGAGTTATAACAGCTTTCTATCTATCAAATAATGAAGCACATCCTGGTTACCATGATGAAGTGGACATTGAGTTTCTAGGGACAACATTTGGAAAGCCTTATACTTTGCAAACCAATGTTTATATAAGAGGGAGTGGAGATGGGAAAATTATAGGTAGAGAAGTCAAATTTCATCTTTGGTTTGATCCTACCAAAGGTTTTCATCACTATGCTATACTTTGGAGTCCTAAGGAGATAATATTCCTAGTGGATGATGTGCCTATAAGGAGGTACCCTCGGAAGAGTGACACAACATTTCCAATTAGACCAATGTGGCTTTATGGTTCAATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAGTATCAACCATTTGTGGCACACTATACAAATTTCAAAGCTAGTGGTTGCACAGCTTATGCGCCTCGATGGTGTCGGCCGGTTTCGGCTTCACCGTATGGCTCTGGTGGATTGAACTCACAGCAAAATAATGCAATGAGATGGGTGCAAAGATATCATATGGTTTATAATTATTGTCAAGATTCAAAAAGAGATCATAGATTAACACCTGAATGTTGGGGTTAA 882 0.3968 MALFLFAIFILMPSLTNAYWPPSPGYWPSSKFQSMSFYKGFTNLWGPQHQTLEQNGLTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREVKFHLWFDPTKGFHHYAILWSPKEIIFLVDDVPIRRYPRKSDTTFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVAHYTNFKASGCTAYAPRWCRPVSASPYGSGGLNSQQNNAMRWVQRYHMVYNYCQDSKRDHRLTPECWG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0979 293 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Psa3g0979 293 Pfam Glycosyl hydrolases family 16 39 220 IPR000757 GO:0004553|GO:0005975
Psa3g0979 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
Psa3g0979 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 292 - -
Psa3g0979 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 292 IPR044791 GO:0004553
Psa3g0979 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 279 IPR013320 -
Psa3g0979 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Psa3g0979 293 Gene3D - 17 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0979 Psa-Chr3 91617889 91620495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0979 1 291 Glycoside Hydrolase AT3G44990 63.574 2.07e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0979 K08235 - gmx:100796698 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0979 3 91617889 91620495 Psa3g0979 3 91617889 91620495 ECH
Psa3g0979 3 91617889 91620495 Psa6g1717 6 96532359 96534399 PCT