Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1633 ATGGCATTGCTCAAGCTTGGATCCAAATCAGATGATATATTTCGTCACGATGGCCAAACATGGCATTGTACAACTGGACTTATTAGTGATGTTACCATTGAAGTAGGCGAAACGTCTTTCTTCCTTCACAAGTTCCCCTTGCTTTCTAGAAGTGGATTACTAAAGAAACTCATCGCGGACTCATCACATGAGGATGGAACAATTTCCGTTTTGCAACTTCATGATGTACCCGGTGGAGACAAAACATTTGAGATCATAACAAAATTTTGCTACGGCGTAAAACTCGAAATCACATCATTAAATGTTGTTCGTCTAAGATGTGCGGCGGAGTATTTACAAATGAATGAAAATTACGGTGAAGGAAACTTAGTCGACTTGACAGAAACTTTTCTCAACGAAGTTTTCAGCAATTGGTCAGATTCTATAAAAGCACTTCAAACATGTGAAGAAGTTAAACCATATGCAGAAGAACTTCATATTATTTCAAGATGCATTGATTCCTTGACCATCAAGGCATGTTCCGAGGATATTTTATGCTCCGAAATTAAATCTCAGGCTTCTGGTGATGATTGGTGGTGTGAAGATTTGTGTATGTTAAGTTTACCTTTATATAAAAGACTTATTATATCAGTTGAATCAAAAGGTATGAAACCGGAGAATATTGTTGTGACGTTAATATATTATCTTAGAAGATTTATACCCTTGATGAATAGACAATCTAGTTTCAATGAAAAAACTAGTGTTAGTCAAGGGACAACACCAAGTAGAAGTTCAGAAGTGAATCAAAGGACATTATTGGAAGAAATCGTAGGGTTGATTCCGAATAAAAAATTTGTCGCACCTTCGAAATATCTCCTTAGGTTGTTAAGAACAGCTATGATATTACATGCGAGTTCATCATGCATAGAGAATTTGGAGAAAAGGATTGGTTCTCAGCTTGATCAAGTTGAACTTGTGGATATTTTGATTCCAAATATGGGATATTCAGTTGAGACACTCTATGATATAGATTGTATTCAAAGGATTATTGATCATTTTATGTCAATGTATCAACCTGCAACAGCATCAACTACTCCATCATGTGTACATGAAGAGGGATCATTGATTGGTGGAGTTGATGCATTGACACCTATGACAATTGTGGCTAATTTGTTGGATTCTTATCTTGCGGAAGTGGCTTTGGATGTTAATTTGAAGTTGCCTAAGTTTCAAGCTCTTGCTTCTTCAATTCCTGATTATGCTAGGCCTTTGGATGATGGTTTATATCACGCAATTGATGTATACCTTAAGGCACATCCATGGCTGATAGATTCAGAAAGGGAACAATTTTGCAGACTTATGAACTGCCAAAAGCTTTCATTAGAAGCAAGCACACACGCAGCACAAAATGAAAGAGTACCACTAAGAGTAATAGTGCAGGTCCTATTTTTCGAACAGCTTCGACTTCGAACATCGATTTCTAGCTGGTTGTTTGTTTCCGACAACCTCGAGACTTCACAAAGTGGAAACCTTGGATTGACAAGGAGTAATGGAAATGGTCATGTGGATACCACACAAGGTGGTGAAAACTTGAGGGATCGTGTCTCAGAGCTAGAGAAGGAGTGTTCAAGTATCAGAAATGAGCTTAAGAAACTTGGTAAAACTAAGAGAGGTTGGAGCATTTTTCCAAGAATTTTCTTTAGAAAACGTTCCTCCTAG 1698 0.374 MALLKLGSKSDDIFRHDGQTWHCTTGLISDVTIEVGETSFFLHKFPLLSRSGLLKKLIADSSHEDGTISVLQLHDVPGGDKTFEIITKFCYGVKLEITSLNVVRLRCAAEYLQMNENYGEGNLVDLTETFLNEVFSNWSDSIKALQTCEEVKPYAEELHIISRCIDSLTIKACSEDILCSEIKSQASGDDWWCEDLCMLSLPLYKRLIISVESKGMKPENIVVTLIYYLRRFIPLMNRQSSFNEKTSVSQGTTPSRSSEVNQRTLLEEIVGLIPNKKFVAPSKYLLRLLRTAMILHASSSCIENLEKRIGSQLDQVELVDILIPNMGYSVETLYDIDCIQRIIDHFMSMYQPATASTTPSCVHEEGSLIGGVDALTPMTIVANLLDSYLAEVALDVNLKLPKFQALASSIPDYARPLDDGLYHAIDVYLKAHPWLIDSEREQFCRLMNCQKLSLEASTHAAQNERVPLRVIVQVLFFEQLRLRTSISSWLFVSDNLETSQSGNLGLTRSNGNGHVDTTQGGENLRDRVSELEKECSSIRNELKKLGKTKRGWSIFPRIFFRKRSS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1633 565 PANTHER OS12G0117600 PROTEIN 4 564 IPR043454 -
Psa6g1633 565 Coils Coil 521 548 - -
Psa6g1633 565 Pfam BTB/POZ domain 27 115 IPR000210 GO:0005515
Psa6g1633 565 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 4 564 - -
Psa6g1633 565 Gene3D Potassium Channel Kv1.1; Chain A 10 156 IPR011333 -
Psa6g1633 565 ProSiteProfiles BTB domain profile. 29 99 IPR000210 GO:0005515
Psa6g1633 565 SUPERFAMILY POZ domain 17 131 IPR011333 -
Psa6g1633 565 ProSiteProfiles NPH3 domain profile. 190 481 IPR027356 -
Psa6g1633 565 Pfam NPH3 family 190 457 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1633 Psa-Chr6 89377347 89379800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1633 14 544 EF-hand Containing Proteins AT3G44820 38.983 3.21e-136 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1633 - - cam:101505875 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1633 6 89377347 89379800 Psa6g1633 6 89377347 89379800 ECH
Psa3g0568 3 51006260 51010081 Psa6g1633 6 89377347 89379800 PCT