Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1335 ATGGCAACCATCTCAGCTACCACCACAACCGCATCAATCTCCCGTGCATGTCTTGCACAGAAGCGACCACTTACAATCTCATCCTCTCCTGTTCTTGGATTACCAACAATGGCTAAGGTTGGAAGAGTGAGGTGTTCAGTGGAAGGAAAGCCTTCATCTGTGAACGAAAGCAGCTCAAAGATGGGAATGACAGCGTCTTTGTTATCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCCATAGCACTAGTGGATGATAGAATGAGTACTGAAGGAACTGGTCTTCCATTTGGACTCAGCAACAATCTTCTTGGTTGGATTCTTTTTGGCGTGTTTGGTCTTATTTGGGCTCTCTATTTTATTTATGCTTCAGGTCTTGATGAGGATGAAGAGTCTGGTTTGTCCCTTTAA 414 0.4565 MATISATTTTASISRACLAQKRPLTISSSPVLGLPTMAKVGRVRCSVEGKPSSVNESSSKMGMTASLLSAACAAAMSSPAAIALVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDEDEESGLSL* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1335 137 Pfam Photosystem II reaction centre W protein (PsbW) 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Psa6g1335 137 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Psa6g1335 137 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1335 Psa-Chr6 60344666 60345169 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1335 K02721 - gmx:100305788 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1335 6 60344666 60345169 Psa6g1335 6 60344666 60345169 ECH
Psa3g1406 3 126297972 126298455 Psa6g1335 6 60344666 60345169 ECH
Psa3g1406 3 126297972 126298455 Psa6g1335 6 60344666 60345169 PCT