Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1406 ATGGCAACCATTATTGCTGGCACCTCAACATCTTCAATCATCCGCACAGGTCTTGTGCACAAGCAACCTCTTGGAGTCTCATTCCAGACCGTAGTTGGATTGCCATCAATGGCTAAGGTTGGAAGAGTGAGGTGTTCCTTTGAAGGAAAACCTGATGTGCAAGAAAGCAGCTCAAACATAGGAATGGGAACATCCTTGATAGCAGCTATCTCTGCTGCAACGTTATCAAGTCCAGCAGCCATGGCTTTGGTAGATGAGAGAATGAGCACCGAAGGAACTGGTCTTCCCTTTGGGCTTAGCAATAATCTTCTTGGTTGGATCTTGTTTGGTGTCTTCGGTCTTATCTGGTCTCTCTATTTTATCTACGCTTCCTCCCTTGAAGAGGATGATGATTCTGGATTGTCTCTGTAA 411 0.455 MATIIAGTSTSSIIRTGLVHKQPLGVSFQTVVGLPSMAKVGRVRCSFEGKPDVQESSSNIGMGTSLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWSLYFIYASSLEEDDDSGLSL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1406 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Psa3g1406 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Psa3g1406 136 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1406 Psa-Chr3 126297972 126298455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1406 K02721 - gmx:100526966 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1406 3 126297972 126298455 Psa3g1406 3 126297972 126298455 ECH
Psa3g1406 3 126297972 126298455 Psa6g1335 6 60344666 60345169 ECH
Psa3g1406 3 126297972 126298455 Psa6g1335 6 60344666 60345169 PCT