Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0954 ATGGATTTCAAAATCAACGAAGGATCAAAACCATTTCTCTCACTTTTTCTCTTTCTGCTGTTTTCTTCCATTTTCCCGCTTTCTTTCTCAGCTGCCAATAAACCCCTTAACTCCGATAAACTCCACCGGCTTGTTTCCTCCGCCGTTTTCCGTCTTCACGGAAATGTTTACCCCCTAGGGTATTATACAGTGTCTCTCAATATTGGTTATCCTCCAAAGATTTATGACCTTGATATTGACTCAGGTAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAATGGTTGCACCAAGCCTCGTGAGCAACTCTATAAACCCAAAAACAATCTTGTGCAATGTGTGGACCAATTGTGTGCTGGAGTGCATTTAACATCAGACTATCACTGTGATACCCCGAATGACCAGTGTGACTATGAGGTTGAGTATGCAGATCATGGGTCGTCTCTGGGGGTCCTCGTCCGAGACTATGTTCCGCTTCAATTCACTAATGGATCTGTGCTACACCCTAAGATAGCCTTTGGATGTGGATATGATCAAAAGTATTCTGGTCCTACCTCTCCACCTGCTACCACCGGAGTTCTTGGCCTTGGCAATGGCAGGACAAGTGTTTTGTCTCAGCTTCACTCTCTAGGTCTGATTCGCAACGTAGTTGGTCATTGCTTAAGTGGTCGAGGAGGGTATCTATTCTTTGGAGATGATTTCATTCCCTCATCAGGAATTGTTTGGATACCCATGTTGCCTAGTTCTTCAGAAAAACACTACAGTTTAGGACCAGCAGAGCTTCTTTTCAATGGAAAGCTTACTACTGTTAAAGGTCTTGAACTTATTTTCGATAGTGGAAGCTCTTACACTTACTTCAATTCCAAAGCTTATCATGCTATTGTTGATCTGGTAAATAATGAATTAAAGGGAAAACAACTGACAAGAGCAACTGAGGATCCATCTCTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCAAATCTGTAACTGATGTCAAAAACTATTTCAAGCCCTTAGCTTTGAGATTCAAAAAAGGGAAGAATTTGCAGATGCTAATACCACCAGAAGCCTATCTCATTGTTACAAAACATGGAAATGTTTGCTTGGGGATTCTGGATGGCACTGAAGTAGGACTAGGAGATCTTAACATAATAGGAGACATCTCTTTACAAGATAAGATGGTAATATACGACAACGAGAGGCAGCAGATTGGATGGATTTCTTCTGATTGCGATAGGATACCCAATATCGATCGTGACTTTGAAGGTGATGCTTTTCCACACCCTTATGCAGCCAATTTGGGTATCTTTGAGGACCAATGTCCCGCCGCTTCTGAAATGTCAGACAGATACCAATGA 1362 0.4214 MDFKINEGSKPFLSLFLFLLFSSIFPLSFSAANKPLNSDKLHRLVSSAVFRLHGNVYPLGYYTVSLNIGYPPKIYDLDIDSGSDLTWVQCDAPCNGCTKPREQLYKPKNNLVQCVDQLCAGVHLTSDYHCDTPNDQCDYEVEYADHGSSLGVLVRDYVPLQFTNGSVLHPKIAFGCGYDQKYSGPTSPPATTGVLGLGNGRTSVLSQLHSLGLIRNVVGHCLSGRGGYLFFGDDFIPSSGIVWIPMLPSSSEKHYSLGPAELLFNGKLTTVKGLELIFDSGSSYTYFNSKAYHAIVDLVNNELKGKQLTRATEDPSLPICWKGAKSFKSVTDVKNYFKPLALRFKKGKNLQMLIPPEAYLIVTKHGNVCLGILDGTEVGLGDLNIIGDISLQDKMVIYDNERQQIGWISSDCDRIPNIDRDFEGDAFPHPYAANLGIFEDQCPAASEMSDRYQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0954 453 Gene3D Acid Proteases 38 233 IPR021109 -
Psa6g0954 453 Pfam Xylanase inhibitor N-terminal 62 233 IPR032861 -
Psa6g0954 453 ProSiteProfiles Peptidase family A1 domain profile. 62 408 IPR033121 -
Psa6g0954 453 PANTHER ASPARTYL PROTEASES 10 415 IPR001461 GO:0004190|GO:0006508
Psa6g0954 453 CDD nucellin_like 60 412 IPR033823 GO:0004190
Psa6g0954 453 Pfam Xylanase inhibitor C-terminal 275 407 IPR032799 -
Psa6g0954 453 Gene3D Acid Proteases 234 419 IPR021109 -
Psa6g0954 453 SUPERFAMILY Acid proteases 54 417 IPR021109 -
Psa6g0954 453 PRINTS Pepsin (A1) aspartic protease family signature 68 88 IPR001461 GO:0004190|GO:0006508
Psa6g0954 453 PRINTS Pepsin (A1) aspartic protease family signature 276 287 IPR001461 GO:0004190|GO:0006508
Psa6g0954 453 PRINTS Pepsin (A1) aspartic protease family signature 384 399 IPR001461 GO:0004190|GO:0006508
Psa6g0954 453 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0954 Psa-Chr6 36796185 36799245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0954 24 416 Miscellaneous Gene Families AT1G44130 58.228 9.29e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0954 - - aprc:113846122 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0954 6 36796185 36799245 Psa6g0954 6 36796185 36799245 ECH
Psa6g0954 6 36796185 36799245 Psa5g1367 5 107002137 107008217 PCT