Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1730 ATGAATCCCCTTAAACGAAGTAACAATTCATCTTCGTCGTCTTCCAATAATTCCTCTCCTTCATCATCATCGTCGTCTTCATCATGGATCCATTTGCGTTCGGTTCTATTCGTTGTTACTTCTTCTTCACCAGCTTCTTGTTCATCCTCTGATCGAGGTCGTCTTAAATCACCATGGTCACGCCGGAAAAGAAAACGTGTCCTTTCTCCTCAACAATGGAAAAACTTGTTTACCCATGACGGGAAAATTCGCGATGGTGGACTAAAGTTCCTGAAAAGAGTTCGCAGTGGAGGTGTTGATCCTAGTATAAGAGCTGAAGTTTGGCCTTTCCTACTTGGAGTGTATGACTTGGACACTACCAAAGAAAAAAGAGATGCTATACGAACTCAAAATAGAAAGAAGTATGAGAAACTCCGTAGACAATGCCGCCAGTTGTTGAATTCCAACAGTGGGAGCTTTAAGTTCTTTGAAATAGGTGAAATCAGCTATGAGGGAGATGGTGTGAGTCTTGTTCAAGATTCTGGTTCTCCTAGTTCTGAAGATGCAGCAAGTGCCAGAGAATCCCTTTCCAGTGGGGAGCAGAGCCCAGATTTTGAATATTCAGATGATCCATCCATTTCCCTGTTGGAAGGAGATGATGCTCCCAACAGCAGCTATGCTGATGCCTCTGCCCTCGATTCAGATTCCACTGACTCAGATTCCTCAGAAAGTCCCGGAGTAATTCAGACATTTCCTTCTGACGACACTTTGGAAGAGAACAACACCGAGACAACTTCCAAGGAGAATTCTTCTCCCTCACAAATGAATGACACTTCAAAACTACGAAGTAGTGAAGACTTTGCCACGTGGCAACGGATCATCCGACTTGATGCAGTACGTGCCAATGCAGAATGGATGCCATACTCTCCCTCTCAAGCTATTGTACATGAAAGCAGGGCACATCGATCTGCTGAGGCTGTTGGTTTGAAGGATTATGGTCACCTAGATGCTGGCAGAATCTTTCATGCTGCTCGGCTGGTTGCTATTCTTGAAGCATATGCACTATACGACCCTGAAATTGGTTACTGCCAGGGCATGAGTGATCTGTTATCTCCTATAATAAGTGTTATATCAGAAGATCACGAGGCATTCTGGTGTTTTGTTGGATTTATGAAGAAAGCTAGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGAAGGCAACTTGATATAGTTGCAAAAATAATCAAGTTTAAGGATTCCCACCTGTTTAGGCACTTGCAGAAGCTCCAGGCCGAGGATTGCTTTTTTGTGTATAGGATGGTGGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAAACTCTTTGCCTTTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGATCTGGTATTGGGAAATCTGCCTGGAACAGAATTAGGCAGCGTGCTCCGCCAACAGACGACTTATTGCTTTTTGCAATAGCGGCCTCCGTGTTACAGAGAAGGAAATTAATTCTTGAGAAGTATAGCAGCATGGATGAGATCATTAAGGAATGCAATGGCATGGCAGGACAACTCGATGTTTGGAAACTCCTGGATGATGCCCATAACTTGGTGGTCACCCTTCATGATAAAATGAAAATAGAGGCATCATTCCGATGA 1647 0.4372 MNPLKRSNNSSSSSSNNSSPSSSSSSSSWIHLRSVLFVVTSSSPASCSSSDRGRLKSPWSRRKRKRVLSPQQWKNLFTHDGKIRDGGLKFLKRVRSGGVDPSIRAEVWPFLLGVYDLDTTKEKRDAIRTQNRKKYEKLRRQCRQLLNSNSGSFKFFEIGEISYEGDGVSLVQDSGSPSSEDAASARESLSSGEQSPDFEYSDDPSISLLEGDDAPNSSYADASALDSDSTDSDSSESPGVIQTFPSDDTLEENNTETTSKENSSPSQMNDTSKLRSSEDFATWQRIIRLDAVRANAEWMPYSPSQAIVHESRAHRSAEAVGLKDYGHLDAGRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIISVISEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDSHLFRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRSGIGKSAWNRIRQRAPPTDDLLLFAIAASVLQRRKLILEKYSSMDEIIKECNGMAGQLDVWKLLDDAHNLVVTLHDKMKIEASFR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1730 548 SMART tbc_4 95 482 IPR000195 -
Psa5g1730 548 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 396 534 IPR035969 -
Psa5g1730 548 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g1730 548 MobiDBLite consensus disorder prediction 172 201 - -
Psa5g1730 548 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 244 385 - -
Psa5g1730 548 ProSiteProfiles TBC/rab GAP domain profile. 98 459 IPR000195 -
Psa5g1730 548 MobiDBLite consensus disorder prediction 220 276 - -
Psa5g1730 548 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE 10 540 - -
Psa5g1730 548 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 72 419 IPR035969 -
Psa5g1730 548 Pfam Rab-GTPase-TBC domain 338 458 IPR000195 -
Psa5g1730 548 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 10 540 - -
Psa5g1730 548 Coils Coil 128 148 - -
Psa5g1730 548 Gene3D - 395 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1730 Psa-Chr5 134351573 134356472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1730 - - gmx:100791150 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1730 5 134351573 134356472 Psa6g0844 6 29721051 29724738 ECH
Psa5g1730 5 134351573 134356472 Psa5g1730 5 134351573 134356472 ECH