Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0680 ATGGGTGGGAAAGGAATCAGCAAAAGCAATCTCTTTGATGATAAAAGAGATGGTTTTTTCTCAATCTCCAATCTAGGGTCTCAGTGGGGTGATATAGGTCATTCTCAGGAACAAGGGTATTATCCTGTTGGTGGTTTATTTGCAAGCATGAGTCAAATGGGAATGGGGTTTGGCGGAGTTCCACAGCCAAAATCTCCATCTTCTGAAAACTCCTCTTCTAAACGAAACAATGGGATGAAGATTCCTTGCACTGAGCTCTACATTAGGTATGTTCAATCAGAAGGGAAAGTGAAGATTCTCGGTGTTCCTGACGAGGAGGAAGGTGAAATAGTGGAAGGTGTTGAGAGAAAGAAAAAGGGTGGTCTTAAGAAGTTTAAGGTCAAGGTGAAAAACCCTTCTTTGAGAAAGCTGATTAGTGGGGCTTTTGCCGGGGCTATTTCTCGTACTGCTGTTGCGCCTTTGGAGACTATTAGGACTCATTTGATGGTTGGGAGTAGTGGTAATTCTAGTGGTGAGGTGTTCAATAACATCATGAATACTGATGGATGGAAAGGGTTGTTTAGGGGGAATCTTGTTAATGTTATAAGAGTTGCACCTAGCAAGGCTATTGAGCTTTTTGCTTATGATACCGTTAACAAGAACCTATCATCAAAGCCGGGTGAAAAGCCTAAACTCCCCATTCCTGCATCACTGATTGCCGGCGCTTGTGCTGGAGTTAGTTCAACTATTTGCACATATCCTCTCGAATTACTCAAGACGAGATTAACTGTCCAGAGAGATGTCTACAACGGTCTACTGGACGCGTTTGTGAAAATAATTCGCGAGGAGGGTGCTTCAGAACTCTACAGAGGCCTTGCTCCTAGTCTTATTGGAGTCATTCCGTATTCTGCCACCAATTACTTTGCTTACGACACTTTGAGAAAAGTGTACAAGAAAGTTTTCAAGCAAGAGAAGATTGGAAACATTGAAACCCTTTTGATAGGTTCTGCGGCTGGTGCTATTTCGAGTAGCGCTACTTTCCCGCTTGAAGTGGCTCGCAAGCAAATGCAAGTTGGAGCACTCAGCGGAAGACAGGTTTACAAGAATGTGATCCATGCGCTTGCGTGCATACTTGAGAAAGAAGGTATCCAAGGTTTGTATAGAGGATTAGGACCAAGCTGCATGAAGTTGGTTCCAGCGGCGGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAAGATATTGGTAGAGGAAGAAGATGAGGAATAG 1248 0.4359 MGGKGISKSNLFDDKRDGFFSISNLGSQWGDIGHSQEQGYYPVGGLFASMSQMGMGFGGVPQPKSPSSENSSSKRNNGMKIPCTELYIRYVQSEGKVKILGVPDEEEGEIVEGVERKKKGGLKKFKVKVKNPSLRKLISGAFAGAISRTAVAPLETIRTHLMVGSSGNSSGEVFNNIMNTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSSKPGEKPKLPIPASLIAGACAGVSSTICTYPLELLKTRLTVQRDVYNGLLDAFVKIIREEGASELYRGLAPSLIGVIPYSATNYFAYDTLRKVYKKVFKQEKIGNIETLLIGSAAGAISSSATFPLEVARKQMQVGALSGRQVYKNVIHALACILEKEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKKILVEEEDEE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0680 415 PANTHER SOLUTE CARRIER FAMILY 25 40 414 - -
Psa6g0680 415 Pfam Mitochondrial carrier protein 319 410 IPR018108 -
Psa6g0680 415 Pfam Mitochondrial carrier protein 225 312 IPR018108 -
Psa6g0680 415 Pfam Mitochondrial carrier protein 132 216 IPR018108 -
Psa6g0680 415 Gene3D Mitochondrial carrier domain 127 413 IPR023395 -
Psa6g0680 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 214 IPR018108 -
Psa6g0680 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 319 407 IPR018108 -
Psa6g0680 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 309 IPR018108 -
Psa6g0680 415 SUPERFAMILY Mitochondrial carrier 132 403 IPR023395 -
Psa6g0680 415 PRINTS Mitochondrial carrier protein signature 136 149 IPR002067 GO:0055085
Psa6g0680 415 PRINTS Mitochondrial carrier protein signature 149 163 IPR002067 GO:0055085
Psa6g0680 415 PRINTS Mitochondrial carrier protein signature 189 209 IPR002067 GO:0055085
Psa6g0680 415 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Psa6g0680 415 PRINTS Mitochondrial carrier protein signature 282 300 IPR002067 GO:0055085
Psa6g0680 415 PRINTS Mitochondrial carrier protein signature 328 350 IPR002067 GO:0055085
Psa6g0680 415 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 40 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0680 Psa-Chr6 23062473 23065898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0680 318 415 Organic Solute Cotransporters AT4G32400 30.392 2.49e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0680 K14684 - gmx:100816041 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0680 6 23062473 23065898 Psa6g0680 6 23062473 23065898 ECH
Psa6g0680 6 23062473 23065898 Psa5g0667 5 53398273 53401016 PCT