Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0669 ATGTCTCAAGTCTTCGGCTTTTCCGGTGATAACTTTTGCCATGGGGGTTCAATATACACAAACCCCAAGGAAGCAAGCTTCTTCCTGTCCCTTGGCCCTCAGGTTGATGTCTACTATCCTCCTCAGAAGAGATCACGGGTCAGCGTTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACAACAATTGATTCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTGCCTGTGGGTGAAGAAAGGAGTGCTTGCGCTTGTGTTTCCAAACGCTGGCTTATGCTTCTAAGCAGTATTTGCAAGAGCGAAATCTGTAGCAACAAAAATACCTCAGATGGCGAGAATAAAATGGAAGGTGACAGTCAGGAGTTTGGAGGTGAGGGATACCTTTCCCGGAGCTTGGAAGGAAAGAAGGCAACTGATGTTAGACTTGCCGCTATTGCAGTTGGAACCGCATCACGTGGAGGATTGGGAAAGCTTTCTATCCGTGGAAACAACTCAAATCGCGGGGTGACTACTCTAGGTCTCAAAGCAGTTGCTAGCGGGTGCCCTTCTCTAAAGGTTCTTTCTCTATGGAATGTTTCCTCTGTTGGTGATGAAGGCCTAATTGAGATTGCTAATGGATGTCAACAGCTAGAGAAGCTTGACCTTTGCAGATGCCCTTCAATTTCCGACAAGGCTTTGATTGCAGTTGCAAAAAACTGTCCAAATCTAACAGAGTTATCATTAGAGTCTTGTCCTAACATTCACAATGAAGGTCTACAAGCCATTGGAAAACTCTGCTCCAATCTGAAGTCTATATCTATCAAGGATTGTGCTGGTGTTGGTGATCAGGGAATCGCTGGCCTCTTTTCTTCAACTTCTTTGCTTTTGACAAAGGTGAAGCTCCAGGCATTGACTGTTTCTGATCTCTCTCTAGCCGTTATTGGACACTATGGAAAAGCAGTTACCGATCTTGTCCTTAATTTCCTCCCAAATGTTAGTGAGAGGGGCTTCTGGGTTATGGGAAATGCTAATGGATTGCATAAACTGAAGTCACTCACAATTGCATCCTGCAGAGGAGTAACCGATGTTGGGCTTGAAGCTGTGGGAAAGGGCTGCCCTAATCTGAAAAGTGTACACCTTCAAAAGTGTGCGTTTCTCTCGGACAATGGGTTGATTTCATTCACCAAGGCTGCTATATCACTTGAAAGCCTAAAATTGGAAGAGTGCCACAGAATTACCCAGTTTGGGTTTTTCGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTTCTCTTGTAAGCTGCTATGGAATCAAAGATCTGGACTTGGAATTGTCACCCTCATCTCCTTGTGAATCACTTCGTTCATTAACAATCTGTAACTGCCCTGGATTTGGAAATGCTACCCTATCCGTACTCGGAAAGTTGTGCCCTCAGCTTCAACAGGTTGAATTGACTGGACTTAAGGGAGTGACAGATGCTGGTTTGCTTCCACTGCTTGAGAGCTCAGAGGCTGGTCTGGTTAAAGTCAATCTTAGTGGTTGTGTAAATCTTACAGACAAAGTAGTTTCATCCCTGGTCAATCTGCATGGTTGGACTCTCGAGATTCTAAACCTTGAAGGTTGTAAAAACATTAGCAATGCTAGTTTGATAGCAATGGCTGAGCATTGCCAGTTGCTTTGTGATCTTGATGTTTCCATGTGTGCGATCTCTGATGCTGGAATAGCAGCCCTGGCACATGCAAAACAGATAAATCTACAGATTCTTTCTCTGTCAGGCTGCACTTTGGTTACAGACAGGAGTTTGCCCGCATTGAGAAAATTGGGCCGCACCCTTTTGGGACTAAACGTCCAGCATTGCAATTCAATCAGCAGCAGTGCAGTTGAAATGCTTGTTGAACTTCTTTGGAGGTGTGACATCCTCTCCTGA 1932 0.4457 MSQVFGFSGDNFCHGGSIYTNPKEASFFLSLGPQVDVYYPPQKRSRVSVPFVFDGEWFEQKQKTTIDSLPDECLFEIFRRLPVGEERSACACVSKRWLMLLSSICKSEICSNKNTSDGENKMEGDSQEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGNNSNRGVTTLGLKAVASGCPSLKVLSLWNVSSVGDEGLIEIANGCQQLEKLDLCRCPSISDKALIAVAKNCPNLTELSLESCPNIHNEGLQAIGKLCSNLKSISIKDCAGVGDQGIAGLFSSTSLLLTKVKLQALTVSDLSLAVIGHYGKAVTDLVLNFLPNVSERGFWVMGNANGLHKLKSLTIASCRGVTDVGLEAVGKGCPNLKSVHLQKCAFLSDNGLISFTKAAISLESLKLEECHRITQFGFFGVLFNCGAKLKALSLVSCYGIKDLDLELSPSSPCESLRSLTICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDAGLLPLLESSEAGLVKVNLSGCVNLTDKVVSSLVNLHGWTLEILNLEGCKNISNASLIAMAEHCQLLCDLDVSMCAISDAGIAALAHAKQINLQILSLSGCTLVTDRSLPALRKLGRTLLGLNVQHCNSISSSAVEMLVELLWRCDILS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0669 643 SUPERFAMILY F-box domain 62 103 IPR036047 GO:0005515
Psa6g0669 643 SMART fbox_2 69 110 IPR001810 GO:0005515
Psa6g0669 643 Gene3D Ribonuclease Inhibitor 254 445 IPR032675 -
Psa6g0669 643 Gene3D Ribonuclease Inhibitor 134 253 IPR032675 -
Psa6g0669 643 Gene3D - 59 108 - -
Psa6g0669 643 SUPERFAMILY RNI-like 160 341 - -
Psa6g0669 643 SMART LRR_CC_2 214 239 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 188 213 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 452 477 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 398 423 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 558 582 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 425 450 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 240 265 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 372 397 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 532 557 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 478 503 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 266 291 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 584 609 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 505 530 IPR006553 -
Psa6g0669 643 SMART LRR_CC_2 346 371 IPR006553 -
Psa6g0669 643 PANTHER UNCHARACTERIZED 16 634 - -
Psa6g0669 643 Gene3D Ribonuclease Inhibitor 505 641 IPR032675 -
Psa6g0669 643 SUPERFAMILY RNI-like 308 639 - -
Psa6g0669 643 PANTHER EIN3-BINDING F-BOX PROTEIN 1 16 634 - -
Psa6g0669 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Psa6g0669 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Psa6g0669 643 Pfam Leucine Rich repeat 347 368 IPR001611 GO:0005515
Psa6g0669 643 Pfam Leucine Rich repeat 372 393 IPR001611 GO:0005515
Psa6g0669 643 Gene3D Ribonuclease Inhibitor 446 504 IPR032675 -
Psa6g0669 643 Pfam F-box domain 66 105 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0669 Psa-Chr6 22846272 22849950 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0669 K14515 - gmx:100820247 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0669 6 22846272 22849950 Psa6g0669 6 22846272 22849950 ECH
Psa6g0669 6 22846272 22849950 Psa5g0669 5 53901030 53905252 PCT