Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0669 ATGTCTAAGGTTTTTGGCTTTACCGGAAGTGATGATTTTTGTACTGGGAGGTCAGTTTACCTTAACCCCAAGGAATCGGGTCTCTTCTTGTCCCTTGGCTGTCAAAAATATGCTTACAAGCCTCGTCAGAAGAGATCCCGCGTCGGTGTTCCATTTGATTTCAGTGGAGATAAATGGTTTGAGCCGAAGCCGGAGCCATCTATTGAAACATTGCCGGATGAATGCCTCTTTGAGATCCTTAGGAGGTTGCCTGCAGGCCAAGATAGGAGTTTGTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAATATTTGCAAGGATGAGATTTGCACCGAAGTTGGTACTGGAAATGGAAGCAAGGATGGTGGCGATCAAGGATTTGGTAATGAAGGGTGTCTTTCTCGAAGATTGGAAGGGAAAAAGGCATCAGATGTTAGACTAGCTGCCGTTGCTGTTGGCACAGCATCTCGAGGAGGATTGGGAAAGCTTTCGATTAATGGATGCAATTCAGATTCTGCGTTGACTAATGCAGGTCTCAAGGCAGTTGCTCATGGCTGCCCTTCGCTAAAGATTTTCACTCTTTGGGATGTTGATACTATTAACGACGAAGGGTTGATTGAGATTGCGAATGGTTGTCATCAGCTAGAGAAGCTTGACCTTTGCAAGTTACAAAATATTTCTGACGAGGCTTTAATTGCCATTGCAAATAACTGCCCAAAGCTGACCGAGTTATCGATAGAGTCATGTCCTAATATCGGTAATGAAGGTCTTCCAGCTATTGGGAAGTTGTGTCCAAATCTAAGGTCTATTTCAATTAAGAACTGTCCCAGAGTTGGTGATCTTGGAATTGTTGGCATGGTATCTTCAGCATCCTTTGTTTTAACAAAGATGACACTTGAATCGCTAGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGATTTGCACTTACCGATCTTGCGCTAAATTCCCTCTCATATGTCACTGACAAGGGATTCTGGGTGATGGGTAATGGCCATGCACTGCAGAAACTAACAACACTCACAATTGGGTTGTGCTCTGGAGTAATAGATATTGGGCTTGAAGCTATAGGAAAGGGTTGTCCAAATGTGAAAAACTTTCATCTTCATAAGTGTGCTTTTCTGTCGGACAATGGGCTGGTATCGTTCACCAAGGCTGCCCCATCAGTTGTGAGCCTACATTTGGAAGAGTGCCACAGGGTGACCCATTTTGGGCTTTTTGGTCTCCTTTATAACTGTGGTTCAAAATTGAAGGCTCTTACTCTTGTGAGCTGCCATGGGATCAAAGATCTGAAACTGGAATTGACCGCAGTATCTCAATGTGAATCAATTTCATCATTATCAATCCGTAACTGCCCTGGAGTTGGTAACTCCACTCTTGCCATCCTTGGAAAGCTCTGTCTTCGGCTTCAGCGTCTTGAATTGATTGGACTTGAGGAAATAACAGACCTAGGGTTTCTTTCTCTGCTTGAGAGGTCCAAGTCCAGTTTGATTAATGTTAATCTAAGCCGTTGCATTAATCTGACAGACGCAGGAGTATCGTCCATGGTCAAGTTGCACAGGAAGACTATCAAAGTGTTAAACCTCAACGGTTGTAAAAGAGTCGGTGATTCTAGCTTGATGGAAATTGCAGGCAACTGTCCAGCACTCAGCGACCTTGATGTTTCCAGGTGCGCTATCACCGATGCAGGAATTGCTGCTCTTGCCCGTGGAGTCCTGCCCAATCTGGGTGTACTTTCTTTGGCAGGCTGCTCGATGGTTTCAAACAAGAGCATGCCCGCATTGAAAAAACTGGGTGATTCCCTCGAGGGATTAAATATCAAAAATTGCAAGTCGATCGGCAGCCACACAGTTGACAAGCTTATTGAAAGTCTCTGGATATGTGACATCCTCTTCTGA 1932 0.4441 MSKVFGFTGSDDFCTGRSVYLNPKESGLFLSLGCQKYAYKPRQKRSRVGVPFDFSGDKWFEPKPEPSIETLPDECLFEILRRLPAGQDRSLCASVSKRWLMLLSNICKDEICTEVGTGNGSKDGGDQGFGNEGCLSRRLEGKKASDVRLAAVAVGTASRGGLGKLSINGCNSDSALTNAGLKAVAHGCPSLKIFTLWDVDTINDEGLIEIANGCHQLEKLDLCKLQNISDEALIAIANNCPKLTELSIESCPNIGNEGLPAIGKLCPNLRSISIKNCPRVGDLGIVGMVSSASFVLTKMTLESLAVSDYSLAVIGQYGFALTDLALNSLSYVTDKGFWVMGNGHALQKLTTLTIGLCSGVIDIGLEAIGKGCPNVKNFHLHKCAFLSDNGLVSFTKAAPSVVSLHLEECHRVTHFGLFGLLYNCGSKLKALTLVSCHGIKDLKLELTAVSQCESISSLSIRNCPGVGNSTLAILGKLCLRLQRLELIGLEEITDLGFLSLLERSKSSLINVNLSRCINLTDAGVSSMVKLHRKTIKVLNLNGCKRVGDSSLMEIAGNCPALSDLDVSRCAITDAGIAALARGVLPNLGVLSLAGCSMVSNKSMPALKKLGDSLEGLNIKNCKSIGSHTVDKLIESLWICDILF* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0669 643 SUPERFAMILY F-box domain 56 105 IPR036047 GO:0005515
Psa5g0669 643 SMART LRR_CC_2 532 557 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 266 291 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 214 239 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 558 582 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 505 530 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 188 213 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 610 635 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 398 423 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 452 477 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 372 397 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 478 503 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 584 609 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 346 371 IPR006553 -
Psa5g0669 643 SMART LRR_CC_2 240 265 IPR006553 -
Psa5g0669 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Psa5g0669 643 Pfam Leucine Rich repeat 534 555 IPR001611 GO:0005515
Psa5g0669 643 Pfam Leucine Rich repeat 560 580 IPR001611 GO:0005515
Psa5g0669 643 Gene3D - 61 112 - -
Psa5g0669 643 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 634 - -
Psa5g0669 643 SUPERFAMILY RNI-like 163 386 - -
Psa5g0669 643 SMART fbox_2 71 112 IPR001810 GO:0005515
Psa5g0669 643 Gene3D Ribonuclease Inhibitor 153 400 IPR032675 -
Psa5g0669 643 Gene3D Ribonuclease Inhibitor 401 643 IPR032675 -
Psa5g0669 643 PANTHER UNCHARACTERIZED 16 634 - -
Psa5g0669 643 Pfam F-box domain 71 107 IPR001810 GO:0005515
Psa5g0669 643 SUPERFAMILY RNI-like 320 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0669 Psa-Chr5 53901030 53905252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0669 K14515 - gmx:100805418 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0669 5 53901030 53905252 Psa5g0669 5 53901030 53905252 ECH
Psa6g0669 6 22846272 22849950 Psa5g0669 5 53901030 53905252 PCT