Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6785 ATGAAGGGTGCCAGCTCAGAGGCGGAGAAAGTGAGAAAGCTCCACCATTTGCGATATGAAAGGTTTAAGGTTCAGCGGAGGAACGATTTTAGTGGACCCGACAACAATGATCAGTGGAGCAAAGAAGAAAGTGATGAAGACTATGGAAGAACGATCTTCATCCACCACATTCACAAGCGCCACCGTTTCCTCAACCCCAAACGCGCCTTTTCATCTCCATTTTCAAACTCTTCTTCAGCAGTACCACAGCCAGAGGACACAGAAACCCTACATTCTAATAGTAGGAACCAATCCACCAACAGTTGGAGCATATACGGAAAGGTAGTTGCGAAACAAAGAATCAGCAATCACAGCGATGAAGATGAAGAAACCGAGGATGGAAAACCAAGTGAGAGTGAAAATGGGAGCATGATGAATTTGAAGAATAGAAGCATAGTTAGGACGGGAACGACGACGAAGAGGGGCACTGGGAAGGTGAAAACTCAGTGGGTTTGTTACGATTGTGGGTATACTGCAGGACAATGGTGGGGAACTTGTCCTTCTTGTAACATGGTTGGCACAATGAAAGAGTTTCATGAAGCGAAAGCTAGTGATGCTGTTGATAGTAGTAAGCTTAGAAGTGGTTTATCAGTTTCTGAAGATGCAGTGAGAACTTGGCTCCCACAGCGATCTGATCAGTTGCAACCAGTTAAATTGAGTGAAGTTAACAGTGGATTCAATGAGAAGGGTTGGCGATTTCCTTTGTCTGGCTCTTTTGGAGATGAAGTTTCTATTGTGCTTGGCGGTGGTCTTGTACCAGGTTCTTTGAATTTAGTTAGTGGAGATCCTGGTGTTTGGAGAATGGCAGCATTGATAGCAGAAGGATGCAATGGCAGTGGCGGCGAGGCCTGTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGTCACAGAGCAAATCGCCTAGGGATTAAATCTGATATTTATTTGTATTCAAGTACTGATATTGAGGACATATTAAGGATAGCTCAGTCTCTCCCCATTCGAGCTCTGGTTGTTGATTCAATACAAACCGTTTATTTGAAAGGAATAGTAGGAAGTGCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTGATGCGATTTGCTAAAACGACTAACATCCCAGTACTTTTGATTGGGCATGTAACAAAATCTGGAGAGATAGCCGGGCCTCGTGTTCTGGAGCATATTGTTGATGTTGTCTTGTACTTGGAAGGTGAGAGGTTCACTTCATATCGAATGCTCCGCGCTGTGAAAAACCGGTTTGGATCCACTGATGAGGATTTTCAGGCCTGTTCCCAATGCACTGAAATGTTTCTCACTGAACAAGACCCTGATTCAGATGTTTTAGTTGGGTTAGCTTTTACCGTAATAATGGATGGTTCAAGAACTTTCATAATTGAAGTTCAGGCACTCTGCCTTTCTCAATCCCCGGTGGGAGGGTCAACTTCAAAAGTAGTTAATGGAGTTGACATAAATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTCATATCCCATCTGTGCATTTGAATGTTGTTAGTGGATTGACATTGACTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTACCCTATTCCAAAGGGCATTGCTTTCATTGGTGAAATTGGTCTTAGTGGAGAGCTTCGCACGAGATTGTGA 1734 0.4354 MKGASSEAEKVRKLHHLRYERFKVQRRNDFSGPDNNDQWSKEESDEDYGRTIFIHHIHKRHRFLNPKRAFSSPFSNSSSAVPQPEDTETLHSNSRNQSTNSWSIYGKVVAKQRISNHSDEDEETEDGKPSESENGSMMNLKNRSIVRTGTTTKRGTGKVKTQWVCYDCGYTAGQWWGTCPSCNMVGTMKEFHEAKASDAVDSSKLRSGLSVSEDAVRTWLPQRSDQLQPVKLSEVNSGFNEKGWRFPLSGSFGDEVSIVLGGGLVPGSLNLVSGDPGVWRMAALIAEGCNGSGGEACPVVYVSGEESLQQIGHRANRLGIKSDIYLYSSTDIEDILRIAQSLPIRALVVDSIQTVYLKGIVGSAGGIMQVKECTSALMRFAKTTNIPVLLIGHVTKSGEIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDEDFQACSQCTEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEVQALCLSQSPVGGSTSKVVNGVDINRANMIKCVLIKQAGLHIPSVHLNVVSGLTLTETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRTRL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6785 577 MobiDBLite consensus disorder prediction 74 106 - -
Psa5g6785 577 Gene3D - 257 443 IPR027417 -
Psa5g6785 577 SUPERFAMILY Ribosomal protein S5 domain 2-like 463 574 IPR020568 -
Psa5g6785 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 440 IPR027417 -
Psa5g6785 577 MobiDBLite consensus disorder prediction 74 139 - -
Psa5g6785 577 ProSiteProfiles RecA family profile 1. 324 394 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Psa5g6785 577 PANTHER DNA REPAIR PROTEIN RADA 50 575 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 165 189 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 258 286 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 301 318 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 350 374 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 389 417 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 424 450 - -
Psa5g6785 577 PRINTS DNA repair protein radA signature 494 517 - -
Psa5g6785 577 Pfam Rubredoxin metal binding domain 163 190 IPR041166 -
Psa5g6785 577 MobiDBLite consensus disorder prediction 23 45 - -
Psa5g6785 577 Gene3D - 452 575 IPR014721 -
Psa5g6785 577 PANTHER DNA REPAIR-LIKE PROTEINRADA 50 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6785 Psa-Chr5 562205794 562215543 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6785 K04485 - gmx:100791181 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6785 5 562205794 562215543 Psa5g6785 5 562205794 562215543 ECH
Psa5g6785 5 562205794 562215543 Psa4g4536 4 404851504 404857506 PCT