Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4536 ATGCCTATTCAATATAAGTTCCAATTTGTAAAACCCTTGAGTTATGTGTTCATAGTCATTCATGCAAATACTAACTACAAACAAATGCTCTCGTTTTCACTCTCTCGCTTCCCTTCATCCCAATCATCATCACTTACTATAAATCCAACTCTTTGCTTTAACCCACCCCAACACCCCAACACTAATCACCGATTCAATTTCCCACAAAGCGCTTCTTCTAGTTCTAGGGACAATGATAAAGCTGAAGATTTTCCAAGACAAAATGCTAATAGTAGAGTAAACCCAATTGAGGGTAGTGATGAAAGAGTTCTATTTGGAAGAAAGAAGAAAAAGGGTAAGGAGAAAGTTTACTGGGTTTGTAGTGATTGTGGGTACACTACTGGACAATGGTGGGGTGTGTGTCGATCATGCAGTGTTTCTGGTACTATGAAAGAGTTTCATGAAGCGAAAACTAGTGAGAGTAATGGTAAGGTTAGTGGGTTTTCGGTTATGGAGGATGGTTTGGGGTCTTGGCTTCCACAGCAGAATGGTGAGCCGCGTCCTTTGAGATTGTCTGAGGTTAATAGAGGACTTGATCATCTGCATTGGAGAATTCCTTTGTCTGGTCTTTTTGGAAATGAAGTTTCTAGAGTGCTTGGTGGTGGCCTTGTACCAGGCTCATTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTGTTGTTACAGATTGCTGCATTAATTGCGGAAGGGCAAAGAGATGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGCGAAGAGAGCATTGAGCAAATTGGTAACAGAGCTGACCGCCTAACAATTGGATCAGATATTTATTTATATTCAAGTAATGATATTGAGGACATATTGAAGAAAGTTCATCATCTCTCTCCTCGGGCACTAGTTGTTGATTCTGTACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATGCAGGTGAAGGAGTGCACTTCGGCTTTACTGCGATTTGCAAAGACAACAAACATACCGGTTCTATTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCACGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTACACTTCCCATCGTATGCTGAGAGCTGTGAAAAATCGTTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTGAGGCTGTTTCAAATGCCAGCGAAATGTTTCTTAGTGAGCAAGACCTAGATTCAGATATTTTAGCTGGATTAGCTGTAGCTGTAATAATGGATGGGTCCAGAACATTTCTTATTGAAATTCAGGCGCTTTGTCTTTCTGGTTCGACAGGATCAAGGCAATTTAATGGTATCCAAGCAAATAGAGCTGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTCCGTCTCCAAGAACATGCTGTGTTTTTAAATGTTGTTAGTGGATTGACACTGAGCGAGACTGCAGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCCTGGAGCTCCCTATTCCAAATGACATTGCATTCATTGGTGAAATAGGCCTTGGTGGTGAGCTTCGCATGGTTACTAGAATGGAAAAAAGGGTACACACAGTGGCGAAATTGGGTTACAGAATGTGTATAGTACCAAAGGCAGCTGAAAAGGTTTTGGGAAGTGAAGGTTTAGAAAATATCAAAGTTGTTGGTTGCAGGAATCTCAAAGATGTTATCACCACTATATTTCCCAATCTCATGAGAAGAAACAACTGA 1800 0.4128 MPIQYKFQFVKPLSYVFIVIHANTNYKQMLSFSLSRFPSSQSSSLTINPTLCFNPPQHPNTNHRFNFPQSASSSSRDNDKAEDFPRQNANSRVNPIEGSDERVLFGRKKKKGKEKVYWVCSDCGYTTGQWWGVCRSCSVSGTMKEFHEAKTSESNGKVSGFSVMEDGLGSWLPQQNGEPRPLRLSEVNRGLDHLHWRIPLSGLFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAALIAEGQRDGEASPVVYVSGEESIEQIGNRADRLTIGSDIYLYSSNDIEDILKKVHHLSPRALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLEAVSNASEMFLSEQDLDSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLSETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVHTVAKLGYRMCIVPKAAEKVLGSEGLENIKVVGCRNLKDVITTIFPNLMRRNN* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4536 599 Pfam Subunit ChlI of Mg-chelatase 472 562 - -
Psa4g4536 599 SUPERFAMILY Ribosomal protein S5 domain 2-like 387 591 IPR020568 -
Psa4g4536 599 SMART AAA_5 218 376 IPR003593 -
Psa4g4536 599 PANTHER DNA REPAIR-LIKE PROTEINRADA 23 591 - -
Psa4g4536 599 Gene3D - 207 407 IPR027417 -
Psa4g4536 599 PANTHER DNA REPAIR PROTEIN RADA 23 591 - -
Psa4g4536 599 MobiDBLite consensus disorder prediction 69 96 - -
Psa4g4536 599 TIGRFAM sms: DNA repair protein RadA 113 586 IPR004504 GO:0003684|GO:0005524|GO:0006281
Psa4g4536 599 Pfam Rubredoxin metal binding domain 118 145 IPR041166 -
Psa4g4536 599 Gene3D - 426 598 IPR014721 -
Psa4g4536 599 ProSiteProfiles RecA family profile 1. 197 350 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Psa4g4536 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 401 IPR027417 -
Psa4g4536 599 Pfam AAA domain 211 354 - -
Psa4g4536 599 PRINTS DNA repair protein radA signature 120 144 - -
Psa4g4536 599 PRINTS DNA repair protein radA signature 210 238 - -
Psa4g4536 599 PRINTS DNA repair protein radA signature 306 330 - -
Psa4g4536 599 PRINTS DNA repair protein radA signature 345 373 - -
Psa4g4536 599 PRINTS DNA repair protein radA signature 380 406 - -
Psa4g4536 599 PRINTS DNA repair protein radA signature 455 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4536 Psa-Chr4 404851504 404857506 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4536 K04485 - gmx:100794165 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4536 4 404851504 404857506 Psa4g4536 4 404851504 404857506 ECH
Psa5g6785 5 562205794 562215543 Psa4g4536 4 404851504 404857506 PCT