Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6682 ATGAATTTGCAACCTGGGCAGTCTAAATCCTCTAATGGATATGGCCGTCGTAAATCTGACAGAGAAGGTGCAGCTAAGTCAGAGAATAAGATACCATCTGAAAAATTAAATGCCAACAGATTGGCAAGTACAGGTGTGATTACTGACATTAAAGATGGCAGTTATGAAAGTCCTTCACATGACCGACTGGTATATCTAACAACATGCTTAATTGGGCAGCAGGTGGAAGTCCAGGTGAAAAATGGGTCTATATACTCTGGAATATTTCATGCAACAAATACAGCCAAAGATTTTGGAATCATTTTGAAAATGGCTCGCTTGACAAAAGATGCTTCTTCCCAAAGGCAGAATCCTGCTGCAGAATTTATCGGCAAGGCTCCTTCGAAGATTTTAATTATACCTGCCAAAGAACTTGTGCAAATTATAGCACAGGGTGTTGCTGTTACTAGAGATGGCCTACCTTGTAAACCTCACCATGATAGATATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCATCATGCTGAGCTGGGAAGAGAACTGAAACCCTGGGTACCTGATGGAGATGATCTACAATGCCCTGAACTGGAAAATATCTTTGATGGCCAGTGGAACAGGGGATGGGACCAGTTTGAAACAAATAAGGCATTGTTCGGGGTAAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAGGGGCCACAGACAAGAGAACTAGAAGTGCATGCTTTAAGAATAGCAAGGGAAATCGAGGGTGAGGAAACTCGAGATCTTCATCTTGCTGAGGAAAGAGGTCTTCACTTTGATGAAGACTTTGATATTGATGAAGAAACAAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGATACATATGAGGAAAATGAAGGCATACTGATGGATTCACACAATTCTGAGACTTTTAGTGGTATATTTGGTTCGGTCGATGAGAGGCGTGGTGGAATAAATTGTGGAGAAGGCAATGATGGAGCTCATACACTGGCTACTTTCTCTCCCATGGATCACCCACAGTCATCTCAGTCAAGTACCGGTGTAGATTTAAGCAGCACGTGTTCTTATGATCATGCTAAGCAGTTTGCGTCTGCAATCCCTTCCAAAAGCTACTCGTCTTCGGATGTGGAAATCAGGTTTCAGCAGAACCCAATTCAAAATCTACGTGGAACCGGTGCTAACACCAAGGAAGAAAATTTTATACAATGTGAGGATGTTCAACTGTCTGAATACGAGGATTCACAGACATCACTCTACTTGAAGAAGGATTTATCTCCTAATGCCAGCTCCTATGCCCCATCATCTCATATATTAACCAAATCTCATGAGAAGATGGGATCCCCCGGGGGTTTAGCATATGGCAAAGCTAATGAGGGAACAGAGTATATAAATTCACACGAGGTCAGTGCATCATCTGGCTCAGATTCTGTGAGAGGCGTGGCAGCATCATCTTCAGGTCCTGGTTTATCTCCAAGTTCATCCGTTGGTTCACTGTCTTCTGAAAAATACTCTTTGAATCCCAATGCAAAGGAATTCAAGCCCAACCCTAATGCAAAGAGTTTTATTCCATCACCTGCTCGTCCTTCCACTCCAGTGTCTGATAGTTCCTTCTATTTTCAACCTAATGTAACTACTGTACCAAATATGCCAGGCCTGCCCGTGAGTATTGGGGTAAGTCATTCAGAGTATTTATTGAATTGA 1731 0.4183 MNLQPGQSKSSNGYGRRKSDREGAAKSENKIPSEKLNANRLASTGVITDIKDGSYESPSHDRLVYLTTCLIGQQVEVQVKNGSIYSGIFHATNTAKDFGIILKMARLTKDASSQRQNPAAEFIGKAPSKILIIPAKELVQIIAQGVAVTRDGLPCKPHHDRYQEIMVDSLISQSHHAELGRELKPWVPDGDDLQCPELENIFDGQWNRGWDQFETNKALFGVKSTFNEELYTTKLEKGPQTRELEVHALRIAREIEGEETRDLHLAEERGLHFDEDFDIDEETRFSSVYRGKHVDDTYEENEGILMDSHNSETFSGIFGSVDERRGGINCGEGNDGAHTLATFSPMDHPQSSQSSTGVDLSSTCSYDHAKQFASAIPSKSYSSSDVEIRFQQNPIQNLRGTGANTKEENFIQCEDVQLSEYEDSQTSLYLKKDLSPNASSYAPSSHILTKSHEKMGSPGGLAYGKANEGTEYINSHEVSASSGSDSVRGVAASSSGPGLSPSSSVGSLSSEKYSLNPNAKEFKPNPNAKSFIPSPARPSTPVSDSSFYFQPNVTTVPNMPGLPVSIGVSHSEYLLN* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6682 576 MobiDBLite consensus disorder prediction 14 29 - -
Psa5g6682 576 MobiDBLite consensus disorder prediction 477 523 - -
Psa5g6682 576 MobiDBLite consensus disorder prediction 1 35 - -
Psa5g6682 576 Pfam Ataxin 2 SM domain 60 144 IPR025852 -
Psa5g6682 576 PANTHER ATAXIN-2 HOMOLOG 7 569 - -
Psa5g6682 576 Pfam Ataxin-2 C-terminal region 511 524 IPR009818 -
Psa5g6682 576 SMART LsmAD_2 220 291 IPR009604 -
Psa5g6682 576 MobiDBLite consensus disorder prediction 477 537 - -
Psa5g6682 576 Pfam LsmAD domain 220 290 IPR009604 -
Psa5g6682 576 PANTHER ATAXIN 2-RELATED 7 569 IPR045117 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6682 Psa-Chr5 557508110 557515908 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6682 - - gmx:100782491 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6682 5 557508110 557515908 Psa5g6682 5 557508110 557515908 ECH
Psa5g6682 5 557508110 557515908 Psa4g4237 4 374571887 374578472 PCT