Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4237 ATGAATTTGCAACAAGTTGGGCAGCCTAAATCTTCTAATGGATATGGTCGTCGGAAATCTGAAAAAGATGGGGCATCCAAATCGGATAATAAGATTCCCCCTGGAAAATCAAATGCTGGCAGATTAGCAAGTACAGGTGCAGTGACAAGTAGTAAAGGTGGTAGTTATGAGAGTCCTTCACGTGATCGACTGGTATATTTAACAACATGCCTTATTGGGCAACAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCTACAAATACTGAGAAAGATTTTGGAATCATTTTGAAAATGGCTTGCTTGACAAAGGATGGGTCTTCGCAAGGGCAGAGCTCCGGTGCTGAATTTGTCAGCAAAGCTCCTTCTAAAACTTTAATTATACCTGGAAAAGAACTTGTACAAGTTATAGCAAAGGATGTTGCTGTTTCTACAGGTGACCTAGCCAGTGAACCTCACTATGATGTGCATCAGGAGATCATGGTTGATTCGGTAATATCTCAACCTCGTCATGTTGATTTAGGGAGAGAATTACACCGATGGGTACCTGATGAAGATGTTCCACAATGCCCTGAACTTGACAATATCTTTGATGGCCCTTGGAATAGTTCTAGGGGCTGGGATCAGTTTGAAACGAATAAAATGTTGTTTGGGGTAAAAAGCACATTTGATGAGGAGCTCTATACTACAAAGCTTGAAAAAGGGCCTCGGATGAGAGAATTGGAGATGCAAGCACTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATATTCATCTAGCAGAGGAAAGAGGCCTTTACCCTGATGACTTTGACATTGATGAAGAGACCAGATTCTCTTCCGTATATAGGGGTAAAGGTGTTGACGATGAATATGATGAAAATGAAGACAATTTTTTGGATTCCCACAATTCTGAAACGTTTGGAGATATGTCGGATTCAGTCATAAAGAGACCAGGAAAGGTAAGTGGTGGCAAAGGCAAAAATGGAGCTCAAACATGGTCAAATTTCTCGACTATGTCATCTCAGTCAAAAACTGGTGGAGATATATGCCTCTCTGGTTCTTATGATCATGCTAAGCAGTTATCATCTGAAGTCTCTGGTCAAAGCTACTCATTATCAGATGCGGAAAGCAGGATTCAGGATAACTCAGTTTGTGATCTACATGGAGCCAATGGTAACACCAAGGAAGAAAATCAGACGCAAGCTGAGGATGTACAGCTGTCAAAATATCAGGATTTACGTCCAGCACTCAACTTGAAGAAAGATGGATCTGATAAAGTGGGATTATCTCCTACTAATGCCTCCTCCTATACCTCCTCTACTCATATTTCATCGAAGGTTGATGAAAAAACTGGATCACATGTAGACTTGACTGGGGGTTCAGAATCTGTCAAAGCAAGTTGGGAAACAAAGTCCTTAAATTCACGTGGAAGATCAGAAACACGTATATCATCTGGTTCAGATTTTATAGCAGGTGTGGCAACATATTCTGGTCCAAGTTTATCACCAAGTTCTTCACTTGGTTCACTGTCTTCCGACAAATCAACTCTGAATCCCTATGCGAAGGAATTTAAACTGAACCCTAATGCTAAGAGTTTCGTTCCGTCTCAAGCACCTGTTAGGCCTCGCTCCCCGGTGTCTGATGGTTCCTTCTATTACCCAGCAAACGCATCTACTGTACCGAGTATGCCAACCATGCCAATGGGTGTCGGAGTTGGAACTTCTTTTGCCGGGCCACAGCCTATGATGTATAATCCACAAGCACAAATGCCATCCCAACCATATTTTCATCAGAATGGACCACAGTATGGACAAATTCATGGTCATCCTAGACAAGTTCTATACATGCCCAATTACCTACCT 1890 0.418 MNLQQVGQPKSSNGYGRRKSEKDGASKSDNKIPPGKSNAGRLASTGAVTSSKGGSYESPSRDRLVYLTTCLIGQQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSGAEFVSKAPSKTLIIPGKELVQVIAKDVAVSTGDLASEPHYDVHQEIMVDSVISQPRHVDLGRELHRWVPDEDVPQCPELDNIFDGPWNSSRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPRMRELEMQALRIAREIEGEETQDIHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDEYDENEDNFLDSHNSETFGDMSDSVIKRPGKVSGGKGKNGAQTWSNFSTMSSQSKTGGDICLSGSYDHAKQLSSEVSGQSYSLSDAESRIQDNSVCDLHGANGNTKEENQTQAEDVQLSKYQDLRPALNLKKDGSDKVGLSPTNASSYTSSTHISSKVDEKTGSHVDLTGGSESVKASWETKSLNSRGRSETRISSGSDFIAGVATYSGPSLSPSSSLGSLSSDKSTLNPYAKEFKLNPNAKSFVPSQAPVRPRSPVSDGSFYYPANASTVPSMPTMPMGVGVGTSFAGPQPMMYNPQAQMPSQPYFHQNGPQYGQIHGHPRQVLYMPNYLP 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4237 630 Coils Coil 244 264 - -
Psa4g4237 630 MobiDBLite consensus disorder prediction 1 56 - -
Psa4g4237 630 MobiDBLite consensus disorder prediction 428 491 - -
Psa4g4237 630 MobiDBLite consensus disorder prediction 437 455 - -
Psa4g4237 630 Pfam LsmAD domain 223 292 IPR009604 -
Psa4g4237 630 MobiDBLite consensus disorder prediction 15 29 - -
Psa4g4237 630 SMART LsmAD_2 223 293 IPR009604 -
Psa4g4237 630 PANTHER ATAXIN 2-RELATED 4 626 IPR045117 GO:0003723
Psa4g4237 630 PANTHER ATAXIN-2 HOMOLOG 4 626 - -
Psa4g4237 630 MobiDBLite consensus disorder prediction 42 56 - -
Psa4g4237 630 MobiDBLite consensus disorder prediction 465 491 - -
Psa4g4237 630 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4237 Psa-Chr4 374571887 374578472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4237 - - mtr:MTR_8g019560 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4237 4 374571887 374578472 Psa4g4237 4 374571887 374578472 ECH
Psa5g6682 5 557508110 557515908 Psa4g4237 4 374571887 374578472 PCT