Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6497 ATGGACGCAAGCACAAAGACAAAGAAGGGAGCCGGAGGAAGGAAAGGAGGAGGACCAAGGAAGAAGTCCGTCACCAGATCCGTCAGAGCTGGTCTTCAATTTCCCGTAGGAAGAGTCGGCCGATTCTTGAAGAAAGGTAGATACGCTCAGCGTGTTGGTACTGGTGCTCCTGTTTACTTGGCTGCAGTTCTCGAATATCTTGCTGCTGAGGTTCTTGAGTTGGCTGGAAATGCAGCACGTGATAACAAGAAGAATAGAATCAGTCCAAGACATTTGTTGTTGGCAGTGAGGAATGATGAAGAGCTTGGAAAATTGCTTGCTGGTGTTACCATTGCTTATGGTGGTGTTCTTCCCAATATCAACCCAGTGCTTTTGCCTAAGAGGAAAGAAAACGCTGCTGCCAGTACTCCAAAGTCTCCATCTAAGGCCAAGAAGTCTCCCAAGAAGGCTTAA 453 0.4746 MDASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKRKENAAASTPKSPSKAKKSPKKA* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6497 150 MobiDBLite consensus disorder prediction 128 150 - -
Psa5g6497 150 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Psa5g6497 150 PANTHER HISTONE H2A 7 145 - -
Psa5g6497 150 Pfam Core histone H2A/H2B/H3/H4 20 97 IPR007125 GO:0003677
Psa5g6497 150 Gene3D Histone, subunit A 9 138 IPR009072 GO:0046982
Psa5g6497 150 SUPERFAMILY Histone-fold 13 130 IPR009072 GO:0046982
Psa5g6497 150 MobiDBLite consensus disorder prediction 1 26 - -
Psa5g6497 150 CDD H2A 23 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 PANTHER HISTONE H2A 7 145 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Psa5g6497 150 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa5g6497 150 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6497 Psa-Chr5 548852012 548853854 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6497 K11251 - gmx:100797700 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6497 5 548852012 548853854 Psa7g4316 7 351134608 351136570 PCT