Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6483 ATGCATCAAAAGATAGGAAATTTGAAGATGGGTGAAATCAAAGTGGTGTCACCAATGGCGCAGACACAGGTTATGTCTGTGAGCACGCCGAGGAAGAAAATGACGAAACAATTGACAGGAAAAAGAGATGATACACATTTGCATTCTGCGGCAAGAGCGGGGAATTTAGAAGTTGTGAAAGAAACCCTTAAAGATGCTGAAGGAGATGAGTTGGTTGAATTATTGGCTAGGCAAAATCAAGATGGTGAAACTGCTCTTTATGTTGCTGCTGAATATGGTTACGTCAATGTTGTTCGGGAAATGATTCAGTATTATGATCTCGCTGAGGCGGCAATTAAAGCAAGAAATGGTTTTGATGCATTTCATATCGCTGCTAAACAAGGAGATATAGATATATTGAAGATCCTAATGGAAGTTCATCCGGAATTGTCAATGACAGTGGATCCATCAAACACAACAGCTTTGCACACAGCCGCAGCACAAGGACATATTGATATAGTAAAATTCCTATTGGAAGCAGGAAGTAGCTTAGCAACCATTGCTAAAAGTAACGGTAAAACCGCTCTTCATTCTGCCGCGAGAAACGGACATTTGGAGGTTGTGAAAGCACTTCTTGAGAAAGAGCCTGGTGTTGCAATAAGGGTTGATAAAAAGGGACAAACAGCACTTCACATGGCTGTTAAGGGACAAAATCTTGAGGTAGTGGAAGAGTTGATAAAAGCCGATCCTTCGACGATAAACATGGTTGATACTAAAGGAAACACCGCATTGCATATAGCAACCAGGAAAGCCAGGGCTCAGATTGTAAAGATGCTGTTAGCACAAAAGGAAACAGATACAAATGCTGTTAATAGATCAGGCGAAACCGCGGTAGACACTGCTGAGAAAATAGGGAACCAAGATGTTAGAGCCATTCTATTAGAACATGGCGTTCAAAGTGCGAAAACTATAAAACCACAAGGAACAACTACAACGGCTCGCGAGTTAAAACAAACGGTAAGCGACATAAAGAACGAGGTACATTACCAACTAGAACACACTCGACAAACGCGAAAGCGCGTCCAAGGAATCGCGAAACGGATCAACAAAATGCATACAGAAGGACTCGACAACGCAATAAACTCAACAACCGTTGTTGCAGTACTAATAGCAACGGTTGCATTTGCCGCGATTTTCACCGTCCCTGGTCAATTTGTGGACGATCCAAACAATATTCCACCGGGGATGGCACTCGGTGAAGCGAATATAGCGCCAGAAGTATCGTTTATAATTTTCTTCGTGTTTGATTCAATCGCGCTCTTCATTTCTCTAGCCGTTGTGATTGTTCAAACTTCGGTCGTTGTTATAGAAAGCAAAGCAAAGAAACAAATGATGGCTATTATTAATAAGCTAATGTGGTTAGCTTGTGTGCTTATTTCTGTGGCATTTTTGGCATTGTCATTTGTTGTGGTTGGAAAGGAAGAAAGATGGTTGGCAATTGGTGTTACCATTATAGGGACAACTATAATGGCTACAACGTTGGGAACTATGTGTTATTGGGTGATTAGGCATAGAATTGAGACAAAAAATTTGAAGAACATGAGGAGATCCTCATTGGATAGCAGTGCAAAGTCATTCTCTGTGACTGCTTTATCAGATTCTGAGTTGATAAACAATGACTTTAAGAAAATGTATGCTATTTAG 1683 0.4088 MHQKIGNLKMGEIKVVSPMAQTQVMSVSTPRKKMTKQLTGKRDDTHLHSAARAGNLEVVKETLKDAEGDELVELLARQNQDGETALYVAAEYGYVNVVREMIQYYDLAEAAIKARNGFDAFHIAAKQGDIDILKILMEVHPELSMTVDPSNTTALHTAAAQGHIDIVKFLLEAGSSLATIAKSNGKTALHSAARNGHLEVVKALLEKEPGVAIRVDKKGQTALHMAVKGQNLEVVEELIKADPSTINMVDTKGNTALHIATRKARAQIVKMLLAQKETDTNAVNRSGETAVDTAEKIGNQDVRAILLEHGVQSAKTIKPQGTTTTARELKQTVSDIKNEVHYQLEHTRQTRKRVQGIAKRINKMHTEGLDNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPPGMALGEANIAPEVSFIIFFVFDSIALFISLAVVIVQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKEERWLAIGVTIIGTTIMATTLGTMCYWVIRHRIETKNLKNMRRSSLDSSAKSFSVTALSDSELINNDFKKMYAI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6483 560 ProSiteProfiles Ankyrin repeat profile. 252 285 IPR002110 GO:0005515
Psa5g6483 560 ProSiteProfiles Ankyrin repeat profile. 116 148 IPR002110 GO:0005515
Psa5g6483 560 Gene3D - 179 353 IPR036770 -
Psa5g6483 560 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 22 560 - -
Psa5g6483 560 Gene3D - 20 178 IPR036770 -
Psa5g6483 560 SMART ANK_2a 81 109 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 218 248 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 116 145 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 252 282 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 286 315 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 150 179 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 184 213 IPR002110 GO:0005515
Psa5g6483 560 SMART ANK_2a 42 73 IPR002110 GO:0005515
Psa5g6483 560 ProSiteProfiles Ankyrin repeat region circular profile. 218 240 - -
Psa5g6483 560 ProSiteProfiles Ankyrin repeat region circular profile. 184 207 - -
Psa5g6483 560 ProSiteProfiles Ankyrin repeat region circular profile. 150 177 - -
Psa5g6483 560 SUPERFAMILY Ankyrin repeat 47 311 IPR036770 -
Psa5g6483 560 ProSiteProfiles Ankyrin repeat profile. 218 240 IPR002110 GO:0005515
Psa5g6483 560 ProSiteProfiles Ankyrin repeat region circular profile. 252 273 - -
Psa5g6483 560 ProSiteProfiles Ankyrin repeat region circular profile. 116 138 - -
Psa5g6483 560 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Psa5g6483 560 Pfam Domain of unknown function 367 483 IPR026961 -
Psa5g6483 560 ProSiteProfiles Ankyrin repeat profile. 81 103 IPR002110 GO:0005515
Psa5g6483 560 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Psa5g6483 560 ProSiteProfiles Ankyrin repeat region circular profile. 81 103 - -
Psa5g6483 560 PANTHER ANKYRIN REPEAT PLANT PROTEIN 22 560 - -
Psa5g6483 560 Pfam Ankyrin repeats (3 copies) 184 243 IPR002110 GO:0005515
Psa5g6483 560 Pfam Ankyrin repeats (3 copies) 247 312 IPR002110 GO:0005515
Psa5g6483 560 Pfam Ankyrin repeats (3 copies) 34 104 IPR002110 GO:0005515
Psa5g6483 560 Pfam Ankyrin repeats (3 copies) 108 177 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6483 Psa-Chr5 548018846 548021287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6483 24 560 Miscellaneous Gene Families AT1G07710 74.674 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6483 - - gmx:100791519 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6483 5 548018846 548021287 Psa5g6483 5 548018846 548021287 ECH
Psa5g6483 5 548018846 548021287 Psa7g5051 7 443660572 443664127 ECH