Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6456 ATGGCATCATCATCCTTAAACTTCCTCAAAATGATGTTCTTCCTCTTGTTCATTTCACCTTCATTCTCATCTCCAACTGCATCATCCTTGGGAAATTTACGAGCAGAAAATCTCATAAGAGGACTTAATCTTTTTCCAAAAGATTCCATTAACACACCAGAGAACGACCCTCATATTGTTCATGGAAATATTGTCGAAAAGAAGTTCACTTTCCCTGGTTTTTCTCATTCTGGTTTGTCTGTTGAAGAACTTGGTCATCATGCAGGGTATTATCGTCTTCCTAATTCCAAAGCTGCAAGGATGTTCTATTTTTTCTTCGAATCCCGAAACAAGAAAGATGACCCTGTTGTCATATGGTTAACCGGAGGTCCAGGATGCAGCAGTGAAATTGCTTTGTTTTATGAAAATGGTCCTTTTAAGTTTTCCAAGAACTTGTCCCTTGTTTGGAATGAATATGGATGGGATAAGGCATCGAATATTATATTTGTAGATCAACCAACTGGAACAGGTTTCAGCTATACCACTGATGATGACGACATTCGTCACGACGAAGATGGTGTTAGCAATGATCTGTACGACTTCTTGCAGGCATTTTTCAAGGAACATCCTCAGTTCACTAAGAATGATTTTTACATTACCGGAGAATCGTACGCTGGACACTACATTCCAGCTTTTGCATCAAGGGTTCACCAGGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTTAAGGGTTTTGCTATTGGTAATGGATTAACCAATCCTGAAATTCAGTACAAGGCATATACAGATTTTGCATTAGACAATGGATTAATTAATAAAGCTGAACATGACAGAATCAACAAGTTGGTTCCACCATGTCAAAAGGCTATAGAGGCTTGTGGCACTAAAGGCGGTGAAGCATGCTTGACTTCAAGGAGTATTTGCAGTGGCATATTCAACCAGATCATGGACATTGCCGGAAATATTAATTACTATGACATTAGAAAACAATGTGTGGGAAGTCTTTGTTATGACTTCTCCAATGTGGAAACATTCTTGAACATGGATACAGTCAGAAAAGCTTTAGGTGTTGGGGACTTGGAATTTGTTTCTTGCAGTAGCACGGTATACAGTGCCATGATGGAGGATTGGATGAAAAATCTTGAAGTTGGTATTCCTGCTCTTCTTGAGGATGGAATCAAGTTGCTTGTGTATGCTGGCGAAGAAGATCTCATTTGCAATTGGCTTGGGAATTCAAGGTGGGTTGATGCCATGAAGTGGTCAGGTCAAAAAGAATTTCAGACGTCTCCTATAACACCATATTTGGTTGACAGAGAAGAAGCAGGAAGTCTGAAAACCCATGGATCTCTTGCTTTCCTCAAGGTGAAAGAGGCTGGTCACATGGTTCCTATGGATCAACCAAAAGCTGCACTTCAGATGCTACAAGATTGGATGCAAGGGAAACTAGTAAGTACAAAGGGAGGAGATAATGTTTCACCTATATGA 1488 0.3965 MASSSLNFLKMMFFLLFISPSFSSPTASSLGNLRAENLIRGLNLFPKDSINTPENDPHIVHGNIVEKKFTFPGFSHSGLSVEELGHHAGYYRLPNSKAARMFYFFFESRNKKDDPVVIWLTGGPGCSSEIALFYENGPFKFSKNLSLVWNEYGWDKASNIIFVDQPTGTGFSYTTDDDDIRHDEDGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYKAYTDFALDNGLINKAEHDRINKLVPPCQKAIEACGTKGGEACLTSRSICSGIFNQIMDIAGNINYYDIRKQCVGSLCYDFSNVETFLNMDTVRKALGVGDLEFVSCSSTVYSAMMEDWMKNLEVGIPALLEDGIKLLVYAGEEDLICNWLGNSRWVDAMKWSGQKEFQTSPITPYLVDREEAGSLKTHGSLAFLKVKEAGHMVPMDQPKAALQMLQDWMQGKLVSTKGGDNVSPI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6456 495 ProSitePatterns Serine carboxypeptidases, serine active site. 212 219 IPR018202 GO:0004185
Psa5g6456 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 162 IPR001563 GO:0004185|GO:0006508
Psa5g6456 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 173 IPR001563 GO:0004185|GO:0006508
Psa5g6456 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 198 223 IPR001563 GO:0004185|GO:0006508
Psa5g6456 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
Psa5g6456 495 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED 28 483 - -
Psa5g6456 495 Pfam Serine carboxypeptidase 83 481 IPR001563 GO:0004185|GO:0006508
Psa5g6456 495 Gene3D alpha/beta hydrolase 64 493 IPR029058 -
Psa5g6456 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 483 IPR001563 GO:0004185|GO:0006508
Psa5g6456 495 SUPERFAMILY alpha/beta-Hydrolases 85 482 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6456 Psa-Chr5 546506574 546509069 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6456 K16298 - gmx:100785987 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6456 5 546506574 546509069 Psa5g6456 5 546506574 546509069 ECH
Psa7g4409 7 362190168 362192903 Psa5g6456 5 546506574 546509069 PCT