Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5937 ATGACCCAAGTTCTCCACTCTCCACCTCATTTTGCTTCATCACAAAGAACAACAACAACTTCAACCTCCTCTTCTCCTCTTTCTTCATTCTCTTGCCATGCCATTTTTCAACCTCCCTCACACCCACATTTTCCACTTTTTGAACTTCTAGTTACTCTTTTCAGAAAATCATTATTTCCTTTCAAGAATACTGTCACCAAGGACCTCTCCATTATGGATATAAGCCCTCCGACCAACGTGCGCCATGTTGCGCACGTTACTTTCGATAGGTTCAACGGTTTCTTGGGCTTGCCTGATGAGTTTGAACCTGATTTCCCCAGAAGACCTCCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCGACGGAATCAATGCAGTTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTTCTGTTAATGCAAAGGCATCTGTATGTTCAAGGAGGATTGCAGGTGGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGGATCAATTGAACTTGGGATTGGTTCCGGAAGACGTTGATGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTCGGGAACTTCCAACCGGAGTTCTAGATCCGTTATCACAAGAGCAGGTAATGCAATGCCAAACTGAGGAAGAGTGTATTGAACTAGTCAAGCATCTACCTCATACTGAATCTGCGCTCTTGGATTGGGCCATCAATCTAATGGTCGATGTCGTCCAACATGAAAATCTCAATAAGATGAACGCGCGCAACATTGCCATGGTTTTCGCACCAAACATGACTCAGATGGCAGATCCATTCACTGCATTGATGTTTGCAGTTCAAGTGATGAACTTTTTAAAGACACTTATATTGAGGACACTACGCGAAAGAAATGATTCGGTGGTGGAATCGAATCCTCGATTAAATTTAGAACCATCTGATGAGAACGAACACCGTGGACTTTTCGAGTCGTGTCAGAAAGAAGATACTGCAGCAGTAGACAATGAAGCGGCTAAGGAAAATTTTGTCTCAGAAAAATCTGTCTTAGAATGCTCACCTGAATCATCATCGCTCGAAAAAAACTCCTCGACTGGAGGAGAATCTGGTAGAATGATAAGCACTTCTGAGAATCCGGTTTGCAATGAGGATTTGTATTGCGAGTTTCCGCCAAAAAGAAACATGGGAAAGAACAACAAGTCTGGTCAATCAGGTAGTTCAAATGCTAGAAAAGGGTCTAAAAAGACAAGAGGACAGCAACCTGTGAACAACGGAAAAGTATCGGTCGAGAAAAAGGGAACGAAGACTTTGAGCAATACAGATACAAGATCTGACCGAGTCGAAGCTTGGCGGTGA 1359 0.426 MTQVLHSPPHFASSQRTTTTSTSSSPLSSFSCHAIFQPPSHPHFPLFELLVTLFRKSLFPFKNTVTKDLSIMDISPPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQGGLQVEGIFRINADNSQEEHVRDQLNLGLVPEDVDVHCLAGLIKAWFRELPTGVLDPLSQEQVMQCQTEEECIELVKHLPHTESALLDWAINLMVDVVQHENLNKMNARNIAMVFAPNMTQMADPFTALMFAVQVMNFLKTLILRTLRERNDSVVESNPRLNLEPSDENEHRGLFESCQKEDTAAVDNEAAKENFVSEKSVLECSPESSSLEKNSSTGGESGRMISTSENPVCNEDLYCEFPPKRNMGKNNKSGQSGSSNARKGSKKTRGQQPVNNGKVSVEKKGTKTLSNTDTRSDRVEAWR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5937 452 CDD CRIB 72 112 - -
Psa5g5937 452 Gene3D CRIB domain 70 103 IPR036936 -
Psa5g5937 452 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 452 - -
Psa5g5937 452 ProSiteProfiles CRIB domain profile. 74 87 IPR000095 -
Psa5g5937 452 Pfam P21-Rho-binding domain 73 106 IPR000095 -
Psa5g5937 452 Gene3D Rho GTPase activation protein 104 307 IPR008936 GO:0007165
Psa5g5937 452 MobiDBLite consensus disorder prediction 350 378 - -
Psa5g5937 452 PANTHER MKIAA1688 PROTEIN 1 452 IPR044785 GO:0005096
Psa5g5937 452 CDD RhoGAP 136 292 - -
Psa5g5937 452 MobiDBLite consensus disorder prediction 397 436 - -
Psa5g5937 452 Pfam RhoGAP domain 136 270 IPR000198 GO:0007165
Psa5g5937 452 SUPERFAMILY GTPase activation domain, GAP 114 293 IPR008936 GO:0007165
Psa5g5937 452 SMART RhoGAP_3 133 296 IPR000198 GO:0007165
Psa5g5937 452 ProSiteProfiles Rho GTPase-activating proteins domain profile. 119 304 IPR000198 GO:0007165
Psa5g5937 452 SMART PBD_5 74 108 IPR000095 -
Psa5g5937 452 MobiDBLite consensus disorder prediction 392 452 - -
Psa5g5937 452 MobiDBLite consensus disorder prediction 437 452 - -
Psa5g5937 452 MobiDBLite consensus disorder prediction 346 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5937 Psa-Chr5 512800146 512802763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5937 - K20642 ccaj:109798318 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5937 5 512800146 512802763 Psa7g4312 7 350941568 350943301 PCT