Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5898 ATGGAATTTGGAAGCATATTGCCCTTTCTTGAGGGAAAAACAATTTTAGTCACTGGTGCCACTGGATTTCTTGCAAAAATTTTTGTGGAGAAGATATTGAGAGTTCAACCAAATGTGAAGAAACTTTATCTTCTTCTTAGAGCTAAGGATTCTGAATCTGCTACTCAACGCTTTCGAAATGAGATTATAGGGAAGGACTTGTTTAAATTGGTGAAGGAAAATCAAGGTTCAAATTTCAACTCTTTTGTCTCTGAAAAGTTAACTCTTGTGCCTGGTGACATTTCTGAAGAAGGCTTGAATTTGAAGAAATCCATTCTGGAAGAGGAAATTTGCAATCAAACAGATGTTATAGTTAACTTAGCTGCAACAACTAAATTTGATGAAAGGTACGATGTTGCTTTGGGTATAAACACATTAGGAGTCAAACATGTTTTGAGCTTTGCCAAAAAATGTGTTAATCTAAAGGTGCTTGTACACGTGTCAACAGCTTATGTGTGTGGTGAGAGAGGAGGACTCATATTAGAGGATCCTCATCCCTTTGGAGTGTCACTAAATGGAGTGCATGGACTAGACATTGATATGGAAAAGAAATTGGTGGAGGAGAAACTGAATCACCTCCAAGCAAAGGGAGCAACTGAACATGATATTGAAGTTGCCATGAAGGACTTGGGTATTGAAAGAGCAAGTGAATTTGGATGGCCAAACACATATGTGTTCACAAAAGCAATGGGAGAAATGCTTGTTGGAACCTACAAAGAAAACATGTCTGTTGTTATTGTTCGTCCCACCATTGTTACTAGCACTTATAGAGAACCTTTCCCTGGTTGGGTTGAAGGCTTAAGAACCATAGATAGCATAGTTGCTGCCTATGGTAAAGGAAAATTAACAAGCTTCATGGCAGATCTCGACGCAGTTTTCGACGTGATACCTGCAGACATGGTGGTGAATGCAATGCTAGTAGCTATGGTGGCTCATGCAAATCAACCTAGTGATGATCCTATCATATACCATGTAGGTTCCTCCGTTAGAAATCCAATTACATACCGGAGTTTCAGAGAGTTTAATTATCGATATTTCACGGCAAAACCGTGGATAAACAAGGAAGGAAAAGCTGTTAGGGTTGGCAAAATCACTATGTTTAGCAGCATTGCTAGCTTCAAGAGATACATGTTCATACGTTACTTGCTTCCTTTAAAGGGACTAGAGTTGGCAAATTCAATTCTATGCCAATATTTTCATGGAATATATCATGAACTTAACAGGAAAATCACTACTGTTATGCGATTGGTTGATCTTTATCTTCCTTACTTGTTCTTTAATGGCATATTTGATGATATGAATACAGAAAAGTTGATATTGGCTGCAAAAGAAGGAGGTGTAGAAACGAATATGTTTTACTTTGATCCTAAGATTATTGATTGGGATGATTACTTCATGAATATCCATTTTCCTGGTATCTTCAAGTATGCATTCAAGTGA 1479 0.3766 MEFGSILPFLEGKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRAKDSESATQRFRNEIIGKDLFKLVKENQGSNFNSFVSEKLTLVPGDISEEGLNLKKSILEEEICNQTDVIVNLAATTKFDERYDVALGINTLGVKHVLSFAKKCVNLKVLVHVSTAYVCGERGGLILEDPHPFGVSLNGVHGLDIDMEKKLVEEKLNHLQAKGATEHDIEVAMKDLGIERASEFGWPNTYVFTKAMGEMLVGTYKENMSVVIVRPTIVTSTYREPFPGWVEGLRTIDSIVAAYGKGKLTSFMADLDAVFDVIPADMVVNAMLVAMVAHANQPSDDPIIYHVGSSVRNPITYRSFREFNYRYFTAKPWINKEGKAVRVGKITMFSSIASFKRYMFIRYLLPLKGLELANSILCQYFHGIYHELNRKITTVMRLVDLYLPYLFFNGIFDDMNTEKLILAAKEGGVETNMFYFDPKIIDWDDYFMNIHFPGIFKYAFK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5898 492 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 358 IPR036291 -
Psa5g5898 492 Pfam Male sterility protein 17 318 IPR013120 -
Psa5g5898 492 PANTHER FATTY ACYL-COA REDUCTASE 2 490 - -
Psa5g5898 492 CDD FAR_C 392 491 IPR033640 -
Psa5g5898 492 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 490 IPR026055 GO:0080019
Psa5g5898 492 Gene3D - 8 381 - -
Psa5g5898 492 Pfam Male sterility protein 393 492 IPR033640 -
Psa5g5898 492 CDD FAR-N_SDR_e 13 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5898 Psa-Chr5 508966051 508968990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5898 110 491 Acyl Lipid Metabolism Gene Families AT4G33790 63.351 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5898 K13356 - gmx:100789566 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5898 5 508966051 508968990 Psa5g5898 5 508966051 508968990 ECH
Psa5g5898 5 508966051 508968990 Psa7g3287 7 248424001 248430006 PCT