Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2904 ATGGAAGAAGTAAAAGAGGAACCATGGGACGACGCGTCATGGTCACGTTCGGTTAGTGAAACGGTAAATGGGTCACACGAATTAACGATAAAGGGTTATTCTTTATCCAAAGGAATGGGGGCTGGAAGATACATCACCAGTGACACTTTCAGCGTTGGTGGTTACGATTGGGCTGTTTACTTTTATCCTGACGGAAAAAACCCTGAAGATAATTCTATGTATGTTTCGGTTTTCATTGCACTTGCCAGTGAGGGTACTGATGTTAGGGCTTTATTCAAATTAACATTGCTTGATCAAACTTCAAAGGGTAATCACAAAGTTCATAGCCATTTTGATCGTCCACTTGAGAGTGGTCCTTATACTCTCAAGTACAGAGGCAGCATGTGGGGTTACAAGCGTTTTTTTAAGAGGCCACTGTTGGAAAATTCTGAGTATTTGAAGGATGATTGTCTTGTTATGCACTGCACGGTTGGTGTTGTTAAGACACGATTTGAAAGATCCAAACATGGTGTTGTTGTGCCTGCTTCTGACATGGGTAAAGATTTCAAGGATTTGTTTGAGTCTCAAGTTGGTTGTGACATTGTCTTTAAGGTCAAGAGTGAAAGCTTTAAGGCTCATAAGTTGATTCTCGCTGCTCGGTCGCCTGTGTTTAGAGCTCAGTTTTATGGACTTGTTGGGGATCCTTGCTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCGGACAAAATTCCTGAAGTCTATGAGGTTATGGGCTCAATACCTATGTGCTCTTATACTGTCATGGTGCAGCATCTATTGGCTGCTGCTGATCTCTATAATCTCGATAGGCTAAAAATGTTGTGTGAATCAAGATTGTGTGAAGATATTAATACAGAGACCGTAGCTACAACACTTTCCCTGGCCGAGCAACACCATTGTCCACAGCTCAAGGCAATCTGTTTAAAATTTATTGCAAATCCGAAAAACTTGGGAGCTGTAATGCAATCCGAAGCTTTTTTGCATTTGAAAGACAGCTGCCCCACAATGTTAATGGAATTGCTGGAGATATTTGCCTCAGTGGATCATACCTCAAGTCTGTTGTTGAGCAGGAAAAGAAGCGTCAGTAGCATATATGGGCAGGATTTAACCGATGGAGGGGCAGCAGAATCAGTCAATCCAAATTGCAAGCGTATCAGAAGGCGGACATAA 1224 0.4199 MEEVKEEPWDDASWSRSVSETVNGSHELTIKGYSLSKGMGAGRYITSDTFSVGGYDWAVYFYPDGKNPEDNSMYVSVFIALASEGTDVRALFKLTLLDQTSKGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFKRPLLENSEYLKDDCLVMHCTVGVVKTRFERSKHGVVVPASDMGKDFKDLFESQVGCDIVFKVKSESFKAHKLILAARSPVFRAQFYGLVGDPCLEEVVVEDIEPFIFKAMLLFIYSDKIPEVYEVMGSIPMCSYTVMVQHLLAAADLYNLDRLKMLCESRLCEDINTETVATTLSLAEQHHCPQLKAICLKFIANPKNLGAVMQSEAFLHLKDSCPTMLMELLEIFASVDHTSSLLLSRKRSVSSIYGQDLTDGGAAESVNPNCKRIRRRT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2904 407 CDD MATH 24 157 IPR002083 GO:0005515
Psa5g2904 407 CDD BTB_POZ_BPM_plant 178 298 - -
Psa5g2904 407 Gene3D - 300 381 - -
Psa5g2904 407 SUPERFAMILY POZ domain 174 299 IPR011333 -
Psa5g2904 407 SMART BTB_4 192 301 IPR000210 GO:0005515
Psa5g2904 407 SUPERFAMILY TRAF domain-like 20 159 - -
Psa5g2904 407 ProSiteProfiles BTB domain profile. 192 255 IPR000210 GO:0005515
Psa5g2904 407 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Psa5g2904 407 Gene3D Potassium Channel Kv1.1; Chain A 168 295 IPR011333 -
Psa5g2904 407 CDD BACK_AtBPM-like 298 360 IPR034090 -
Psa5g2904 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 10 372 IPR045005 GO:0016567
Psa5g2904 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 10 372 - -
Psa5g2904 407 SMART math_3 28 140 IPR002083 GO:0005515
Psa5g2904 407 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 162 IPR008974 GO:0005515
Psa5g2904 407 Pfam BTB/POZ domain 182 299 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2904 Psa-Chr5 222014545 222020932 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2904 K10523 - gmx:100778300 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2032 3 181275465 181283942 Psa5g2904 5 222014545 222020932 ECH
Psa5g2904 5 222014545 222020932 Psa5g2904 5 222014545 222020932 ECH