Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2032 ATGCACAGTAACAACAACAACAACATCAACAACTCAGAAGGTAGCAGAAACACCATGAGCATTCTTTCTTCCCGAACAAGCTCTCGTTCTGTAACCGAAACCGTAAACGGTTCACACAAGTTCGTAATTAAGGGATACTCTCTTGCCAAAGGGATGGGAGTTGGAAAACACATAGCCAGCGAAACTTTCACCGTCGGTGGTTACCAATGGGCTATTTACTTCTACCCCGATGGTAAAAACCCCGAGGATAATTCCGCTTATGTTTCCGTTTTCATTGCTCTTGCTTCCGAAGGAACCGATGTTCGTGCTCTTTTTGAACTCACTCTGCTTGATCAGAGTCCCAATGGAAAGCATAAGGTTCATAGTCACTTTGATCGATCTCTTGAGAGTGGTCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGATATAAGCGGTTTTTCAAACGTGCTCAACTCGAGGCATCATCCTTTCTTAAGGATGACTGCTTGAAGATAAATTGCACTGTTGGTGTTGTTGTGTCGTCCATAGATTGTTCTAAATTGACCACCATACATGTTCCTGAATCTGATATTGGATCTCATTTCGGCATGCTGTTAGAGAATGAGGAGGGATCTGATATTACTTTCTCTGTTGGCGGTGAAAGGTTTCACGCACACAAACTTGTTATGGCAGCTCGGTCAACTGCATTTGAAACTGAGTTTTTCAATAGGATGGAGGAAGATGACTGTGATGTTGTTGTTACGGACATGGAACCTAAGGTTTTCAAGGCGTTGCTTCATTTTATTTATAGAGACGCTCTTATAGAAGATGAAGAGTTCTTCATGTCAGGTTCATCGTTTCTGCCTTCAATATCTGAAACATTTGCAGCAAAGTTATTAGCTGCTGCCGAAAAGTATGACTTGCCTAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGACATATCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCCGATCGCCATCATGCTACGGAGTTAAAGTCCATCTGTCTACAATTTTCGGCTGAAAACCTTATTGAATTGCTCTGCATGTAG 1068 0.4213 MHSNNNNNINNSEGSRNTMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDITFSVGGERFHAHKLVMAARSTAFETEFFNRMEEDDCDVVVTDMEPKVFKALLHFIYRDALIEDEEFFMSGSSFLPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKDISIDSVAYILALADRHHATELKSICLQFSAENLIELLCM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2032 355 ProSiteProfiles BTB domain profile. 206 272 IPR000210 GO:0005515
Psa3g2032 355 CDD MATH 37 170 IPR002083 GO:0005515
Psa3g2032 355 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 173 IPR008974 GO:0005515
Psa3g2032 355 SUPERFAMILY POZ domain 184 315 IPR011333 -
Psa3g2032 355 CDD BTB_POZ_BPM_plant 192 314 - -
Psa3g2032 355 Pfam BTB/POZ domain 198 315 IPR000210 GO:0005515
Psa3g2032 355 Gene3D Potassium Channel Kv1.1; Chain A 174 347 IPR011333 -
Psa3g2032 355 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Psa3g2032 355 SMART BTB_4 206 317 IPR000210 GO:0005515
Psa3g2032 355 SMART math_3 41 153 IPR002083 GO:0005515
Psa3g2032 355 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 350 IPR045005 GO:0016567
Psa3g2032 355 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 20 350 - -
Psa3g2032 355 SUPERFAMILY TRAF domain-like 33 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2032 Psa-Chr3 181275465 181283942 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2032 K10523 - gmx:100818306 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2032 3 181275465 181283942 Psa5g2904 5 222014545 222020932 ECH
Psa3g2032 3 181275465 181283942 Psa3g2032 3 181275465 181283942 ECH