Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2696 ATGAAGGCAACATTGAGATACTTAGCAGGAATTGCAGGGCCAAGTGGTTTTGGCTCAAATTCAACTGCTGAACAAGTTACTCAAAACTGCTCTCAGTTTCTTCCTTCCAATCTAACTGCTCTCATCACTGGTGGCACTTCTGGAATTGGAGCAGAAACAGCTAGAGTGTTAGCAAAAAGAGGAGTGATAGTTGTGATTGGTGCAAGGGATTTGAGGAAAGGAAGAGAAGTGAGAGAGAATATTCAAAAGGAGAGTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTTGTTCTGTACAAAGATTTTGTTCTGAGTTTTTAGCTTTAAATCTTCCACTTAATATTCTAATAAACAATGCTGGCATATTCTCTCAAGATTTGGAATTCTCTGAAGAAAAAATTGAGATCACATTTGCTACAAATTACTTAGGACATTTTTTGTTGACAGAAATTTTACTAGACAAAATGGTTGAAACAGCAGAAGAAACAAGTTTTGAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAGAAATGGTTTTTGTTTCACACACATACTCAATGGAAAAAACTATAATGGAACGCGAGCTTACGCTCAATCGAAATTGGCGAATATTTTGCATGCTAAAGAAATAGCTAGACAACTCAAGGCAAGGAATGCAAGAGTAACTATGAATGCAGTTCATCCTGGTATTGTGAAGACAAGAATTATTAACAAGGGCTTAATAACAGATTCCTTATTTTTCATTGCATCAAAGTTACTCAAATCTGCACCACAGGGTGCATCAACAACTTGCTATGTGGCTTTGAGTCCAAAAACAGAAGGAGTGAGTGGAAAATACTTTACAGATTGTAATGAGAGTAACATGGAAAAGGTGAACAAGCTGAAGATGTTATACAATCTTGGAAATGCTCAAGAGACTTCTATTTCTACACCCGAGGTAGATCAACTTGTGGATATTGCGGCCACTTTAACTGTAGGGGAGTTGAACCCGCTTTCAGTTTTAACAAAGAAAGCCCGAGATAAAGATCAACGATCCTCCTGGGAAAATGGTTCTCCAAATAAAACACATGTCATTGGGATGATGCCTCGGGGGTGGATCTCCTTGAGAAGGAGAAGATGGAAGTTATCTCGAAGATTACTCATAGTAAAGGTTGCTGACTCTTTGCAAGAGGAGGAAAAAATCCACGGCTCCCCTACTACTTTGGATGCTTGGGTAACTAAGCTGGAGGATGCCCTTAAATTGTCAGAGAAGCGGTATCAGGATGCCTCTGATATTGTTAAGGAGAAAACTCGGCAAGAGGATGAGAATTATAAGATTATTCTCCAAGAAGCTGAAACTCATGCAGATACCCTGAAATCCCTTAAAGACGAAGCAAGGAAGTTCTGCACCGATGCCATAATTTTGGTTGAGGAGCTGAATCTGTTCCAAGTTGATTCTGGGGTGGCTCAAAAGAGTGGTCATGGAACCCTCCCTGGCTTTATAAGCTTCGACATGGTTTTCATGCGTGAAGTAGGTGTTCGCGGCCAACGTTATATCATATGCCCTTCCCAGATGCGCCCTAGAGAAAACAGGGGATGA 1608 0.4005 MKATLRYLAGIAGPSGFGSNSTAEQVTQNCSQFLPSNLTALITGGTSGIGAETARVLAKRGVIVVIGARDLRKGREVRENIQKESPNAEVILLEIDLSSFCSVQRFCSEFLALNLPLNILINNAGIFSQDLEFSEEKIEITFATNYLGHFLLTEILLDKMVETAEETSFEGRIINVSSVIHSWVKRNGFCFTHILNGKNYNGTRAYAQSKLANILHAKEIARQLKARNARVTMNAVHPGIVKTRIINKGLITDSLFFIASKLLKSAPQGASTTCYVALSPKTEGVSGKYFTDCNESNMEKVNKLKMLYNLGNAQETSISTPEVDQLVDIAATLTVGELNPLSVLTKKARDKDQRSSWENGSPNKTHVIGMMPRGWISLRRRRWKLSRRLLIVKVADSLQEEEKIHGSPTTLDAWVTKLEDALKLSEKRYQDASDIVKEKTRQEDENYKIILQEAETHADTLKSLKDEARKFCTDAIILVEELNLFQVDSGVAQKSGHGTLPGFISFDMVFMREVGVRGQRYIICPSQMRPRENRG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2696 535 Pfam short chain dehydrogenase 39 246 IPR002347 -
Psa5g2696 535 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Psa5g2696 535 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Psa5g2696 535 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Psa5g2696 535 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Psa5g2696 535 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Psa5g2696 535 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Psa5g2696 535 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Psa5g2696 535 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Psa5g2696 535 PANTHER RETINOL DEHYDROGENASE 4 301 - -
Psa5g2696 535 Gene3D - 34 310 - -
Psa5g2696 535 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 297 IPR036291 -
Psa5g2696 535 CDD retinol-DH_like_SDR_c_like 39 300 - -
Psa5g2696 535 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2696 Psa-Chr5 204916168 204921450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2696 19 245 Acyl Lipid Metabolism Gene Families AT1G63380 27.660 8.89e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2696 - K11153 gmx:100819058 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2696 5 204916168 204921450 Psa5g2696 5 204916168 204921450 ECH
Psa4g1381 4 95662354 95664066 Psa5g2696 5 204916168 204921450 PCT