Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2221 ATGGCCTGTTCTGATATTCGGGATTTGTGCGAGGAAGGATCTAACGCTAGCAGCTTGAGAAATAATTGGCAGAAAGCAAGTAAGAAGAATCATTGTAAGAGAAAAACCACTGTTATGGAATTTGAATCAGACTGGACACAGCATCGAAAATCATCCGATTATACTGCTCAAGTGATTCGTTCTGCAACATCTTTTATGCCCTGGTCTGATAAGTCAACTCACACACGAAGCAAAAACAATCTTAGTTTAACTGGTGAGACTCTGGAGAAAGATTATAGCCCTATTCTACCTGGGCTGCCGGATGATGTTGCAAAACATTGTCTTGCACTTGTTCCTCGTTCCAACTTCCCGGCCATGGGTGGTGTCTGTAAGAAATGGAGGTTGTTTATTCGAAGCAAAGAATTTGTAACGGTGCGAAAATTGGCAGGATTGCTTGAGGAATGGCTCTATTTCCTGACAATGGACAGGGAAGGGAAGGAAAGCCATTGGGAGGTCATAGATAATCTCAATCATAAATGTCTATCCCTTCCACCGATGCCTGGTCCAGGAAAGGCTTCGTTTGGGGTTGTGGTTCTGAATGGAAAGCTTCTTATCATGGCTGGTTATTCAGCTGTTGAAGGAACCGCCGTTGCCTCATCAGAGGTTTACCAATATGACTCTTACCTTAACAGTTGGAGCAGATTAGCAAACATGAATGTGGCTCGTTATGACTTCGCTTGTGCCGAAGTGAACGGCTTGGTTTATATAGCTGGAGGCTATGGAGTGAATGGTGACAGTCTCTCTAGTGTTGAGATGTATGATCCAGATACTGACAAATGGATCCTGATAGAGAGTCTTCGTCGCCCAAGGTGGGGTTGCTTTGCTTGTGGATTAGAAGGTAAGCTCTATGTCATGGGTGGAAGGTCGAGCTTTACGATTGGAAACTCCAAGTCCGTCGATATATATAACCCCGAGAAGCACAGCTGGTGCGACATTAAGAATGGCTGTGTTATGGTCACAGCTCACGCAGTATTGGAAAAGAAGTTGTTCTGTATTGAGTGGAAGAACCAGCGGAAGCTGGCAATATTCAGTCCAGAAAACAACTCATGGACAATGGTACCCGTCCCATTGACAGGGAGCTCGAGTGTTGGCTTTCGATTCGGCATACTAGACGGAAAGCTATTGCTATTTCCAGTTGAGAAAGAACCTACTAATCAAACACTGTTATATGATCCAAATGCAGCTTTGGGATCAGAATGGCAAACTTCAGACATAAGGCCATCTGGTTTGTGCTTGTGCAGTGTAACAATCAAGGCATGA 1299 0.4434 MACSDIRDLCEEGSNASSLRNNWQKASKKNHCKRKTTVMEFESDWTQHRKSSDYTAQVIRSATSFMPWSDKSTHTRSKNNLSLTGETLEKDYSPILPGLPDDVAKHCLALVPRSNFPAMGGVCKKWRLFIRSKEFVTVRKLAGLLEEWLYFLTMDREGKESHWEVIDNLNHKCLSLPPMPGPGKASFGVVVLNGKLLIMAGYSAVEGTAVASSEVYQYDSYLNSWSRLANMNVARYDFACAEVNGLVYIAGGYGVNGDSLSSVEMYDPDTDKWILIESLRRPRWGCFACGLEGKLYVMGGRSSFTIGNSKSVDIYNPEKHSWCDIKNGCVMVTAHAVLEKKLFCIEWKNQRKLAIFSPENNSWTMVPVPLTGSSSVGFRFGILDGKLLLFPVEKEPTNQTLLYDPNAALGSEWQTSDIRPSGLCLCSVTIKA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2221 432 Pfam F-box domain 98 135 IPR001810 GO:0005515
Psa5g2221 432 SUPERFAMILY Kelch motif 146 407 IPR015915 GO:0005515
Psa5g2221 432 Pfam Kelch motif 234 279 IPR006652 GO:0005515
Psa5g2221 432 Pfam Kelch motif 286 325 IPR006652 GO:0005515
Psa5g2221 432 Pfam Kelch motif 185 232 IPR006652 GO:0005515
Psa5g2221 432 PANTHER KELCH REPEAT F-BOX PROTEIN 70 432 - -
Psa5g2221 432 SUPERFAMILY F-box domain 94 170 IPR036047 GO:0005515
Psa5g2221 432 SMART kelc_smart 246 293 IPR006652 GO:0005515
Psa5g2221 432 SMART kelc_smart 294 342 IPR006652 GO:0005515
Psa5g2221 432 SMART kelc_smart 195 245 IPR006652 GO:0005515
Psa5g2221 432 SMART fbox_2 99 139 IPR001810 GO:0005515
Psa5g2221 432 PANTHER OS02G0202900 PROTEIN 70 432 IPR045887 -
Psa5g2221 432 Gene3D - 133 430 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2221 Psa-Chr5 174112818 174114519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2221 99 277 Miscellaneous Gene Families AT4G33900 29.016 1.93e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2221 - - gmx:100802912 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2221 5 174112818 174114519 Psa5g2221 5 174112818 174114519 ECH
Psa5g2221 5 174112818 174114519 Psa7g1794 7 129563308 129565350 PCT