Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1216 ATGGCAAGTCGAAGGAGTAGCACGTCTTCCAGGAGAGCATCGGAGTCTGGAGCAGCTCGAAAATCTATTTCGTCTTTGCGCCCTATTGGGGTAACAGGGGAGCGGACAGTGAAATCACTGCGGCTTTCAAGGGCCTTGACAGTACCCGAAACAACAACTATATATGAAGCTTGTCGTCGAATGGCTGCCCGTAGGGTGGATGCTCTATTACTAACCGACTCTAATGGTTTGCTTTGTGGAATCCTCACAGCCAAGGATATATCCACAAAAGTTGTTGCCCAAGAGATTAATCCTGAAGATACACATGTTTCCAAGGTCATGACAAGGAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCTCTCCAAAAGATGGTGCAAGGGAGATTTAGGCATCTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTCGATATCACAAAGTGTTTGTATGATGCCATAGCACGAATGGAAAGGGCTGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACATTGGGGATCAACTAATTCTGACTCTAATTCATCATTCATTGAGGCTCTTCGGGAACAGATATTCAAACCATCATTGTCCACAATCTTTCCTGAGAATTCAAAGATGGTAAAAGTTGCACCAACAGACTCAGTGTTGAATACAACAAAGAAGATGGTTGAGCTTCATGCAAGTTGTGCTGTTGTGACTATTGATGGCAAACCCCAAGGCATCGTTACTTCAAAGGATATCTTGATGCGGGTAATTGCACAAAATCTTCCACCATCATCGACTCCTGTTGAGAAGGTTATGACTCCAAATCCAGAATGCACAGTAATTGATACACCAATTGTTGATGCACTTCATATTATGCATGATGGAAAATTTTTACATCTTCCAGTGGTTGATAGAGATGGAAATGTAGTTGCTGTGGTTGATGTGATTCATGTGACTCATGCTGCTGTGGCTACAGTTAGTCAGGCTGGAAACAACGAAGCTGGCACCTCCCTGATGCACAGATTTTGGGATTCAGCAATGGCCTTGTCTCCAAATGACGATGACGACGAAACACGGAGTGAGAACTCCTTCAAAATAGGTTCTGATGGAGGAGAGACAGGGAGATCGGTTCCTTATTCTTCTGCAAGCATGCCCTATACATTTTCCTTCAAAGTACAAGATAAGAAGGGCAGAATGCATAGATTCACATGTGATACCCGGAGCATGACGGAGGTTATAAGTTCAATCCTTCTGAGACTTGGTACTGATATTGACCCTAACAATCTGCCTCAAATTCTGTATGAAGATGAAGATCAAGATAAAGTTGTGTTGGCTTCAGACAGTGATCTTGCCGCAGCTGTGGACCATGCAAGAACAACTGGTTTGAAGGGATTGAAATTGTATTTAGACTACGAAGGAACAGATAGTAAAAGGGAAGGTTCACGTTCAAGAAGTTTAGACCATGCATATTCAGATGCATGGGCCTCAGCGTATAGTGGTGCTGCTGCTGGAGCTGCTCTTGTTGCTGGTTTAGGTCTACTAACATACTTGAAGCGGGCATGA 1575 0.4368 MASRRSSTSSRRASESGAARKSISSLRPIGVTGERTVKSLRLSRALTVPETTTIYEACRRMAARRVDALLLTDSNGLLCGILTAKDISTKVVAQEINPEDTHVSKVMTRNPVFVLSETLAVEALQKMVQGRFRHLPVVENGEVLALLDITKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGSTNSDSNSSFIEALREQIFKPSLSTIFPENSKMVKVAPTDSVLNTTKKMVELHASCAVVTIDGKPQGIVTSKDILMRVIAQNLPPSSTPVEKVMTPNPECTVIDTPIVDALHIMHDGKFLHLPVVDRDGNVVAVVDVIHVTHAAVATVSQAGNNEAGTSLMHRFWDSAMALSPNDDDDETRSENSFKIGSDGGETGRSVPYSSASMPYTFSFKVQDKKGRMHRFTCDTRSMTEVISSILLRLGTDIDPNNLPQILYEDEDQDKVVLASDSDLAAAVDHARTTGLKGLKLYLDYEGTDSKREGSRSRSLDHAYSDAWASAYSGAAAGAALVAGLGLLTYLKRA* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1216 524 ProSiteProfiles CBS domain profile. 276 337 IPR000644 -
Psa5g1216 524 MobiDBLite consensus disorder prediction 355 382 - -
Psa5g1216 524 MobiDBLite consensus disorder prediction 1 25 - -
Psa5g1216 524 SMART PB1_new 391 476 IPR000270 GO:0005515
Psa5g1216 524 Pfam PB1 domain 391 474 IPR000270 GO:0005515
Psa5g1216 524 CDD CBS_pair_MUG70_1 42 158 - -
Psa5g1216 524 Gene3D - 21 172 IPR046342 -
Psa5g1216 524 Pfam CBS domain 103 147 IPR000644 -
Psa5g1216 524 Pfam CBS domain 272 322 IPR000644 -
Psa5g1216 524 Pfam CBS domain 43 87 IPR000644 -
Psa5g1216 524 Pfam CBS domain 213 258 IPR000644 -
Psa5g1216 524 Gene3D - 204 330 IPR046342 -
Psa5g1216 524 SMART cbs_1 110 154 IPR000644 -
Psa5g1216 524 SMART cbs_1 44 92 IPR000644 -
Psa5g1216 524 SMART cbs_1 279 327 IPR000644 -
Psa5g1216 524 SMART cbs_1 214 261 IPR000644 -
Psa5g1216 524 ProSiteProfiles CBS domain profile. 211 268 IPR000644 -
Psa5g1216 524 SUPERFAMILY CAD & PB1 domains 384 477 - -
Psa5g1216 524 ProSiteProfiles PB1 domain profile. 389 476 IPR000270 GO:0005515
Psa5g1216 524 SUPERFAMILY CBS-domain pair 34 151 IPR046342 -
Psa5g1216 524 SUPERFAMILY CBS-domain pair 214 326 IPR046342 -
Psa5g1216 524 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g1216 524 ProSiteProfiles CBS domain profile. 41 99 IPR000644 -
Psa5g1216 524 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 512 - -
Psa5g1216 524 ProSiteProfiles CBS domain profile. 107 165 IPR000644 -
Psa5g1216 524 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 11 512 - -
Psa5g1216 524 MobiDBLite consensus disorder prediction 368 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1216 Psa-Chr5 94849282 94857127 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1216 - - gmx:100785816 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1216 5 94849282 94857127 Psa7g0828 7 59788147 59795442 PCT