Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0400 ATGGGCGAAGAAACACAACTTCAACCACAATCCCTAACCGGAACTCAAATTGAACCGCAATCTCAGCCGCAGCTTCCGCCACAAACGGAGGTTTCTTCCGATAACATCATCGACGCCATTATCCCCGTTGAGTCCGAACTGAGCAATGTCCCTCCACACACCAATTCACCGGCCACCAAAATCCCCCTCCGTCCTCGAAAGATCCGGAAAGTCTCTCCGGACCCGACGACTTCCGAATCGCAAACGGAAATCCCTAAACCGGTCAATTCATTCCCCGGCGGAAAATCGAATGGACGAAACAACAACAACAAAGCGGTTCAACAACAACAGCGAGCCCTAGCGCTTCCGAGGATTGTTGCTAGGTCACTTTCGTATGAAGGTGAGGTTGAGATGGCGATTCGTTACCTTCGTACTGCAGACCCGCTGCTATCTCCTCTCATCGACATTCATCAACCACCTACCTTTGATAGTTTTCATACTCCGTTTCTTGCCCTAACTCGGAGCATTTTGTATCAACAACTCGCGTTTAAGGCTGGAACTTCGATTTATACGCGATTTATTGCTCTCTGTGGTGGTGAAGGTGGTGTTGTTCCTGAAACTGTTCTTGCTTTGAATCCTCAACAGCTTCGTCAAATTGGGGTTTCTGGGAGGAAGGCTAGTTATCTTCATGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCCGCCATTGTAAATATGGATGATAAGTCGCTTTTCACTATGCTTACTATGGTTAATGGGATTGGGTCTTGGTCTGTTCATATGTTTATGATTTTCTCGCTTCATAGACCTGATGTTCTTCCCATTAATGATCTTGGTGTTCGCAAAGGGGTTCAGATTCTTTATAATCTTGATGATTTGCCTCGGCCGTCTCAGATGGAGCATTTGTGTGAGAAATGGAGGCCTTATCGATCTGTTGCTTCGTGGTATATGTGGAGGTTTGTTGAAGCTAAGGGAACTCCTTCGACGGCTGTGGCTGTTGCCACTGGGGCCGGCTTGCAGCAGCATCAGATGGAGCATCACCACCAACAGCAGCAACAGCAGCAGCATCCTTCACAACAACAACTTATGGATCCCATGAATAGCATGTTTAATATCGGGGCTGCCTGTGCTTGGGGACAGTGA 1152 0.474 MGEETQLQPQSLTGTQIEPQSQPQLPPQTEVSSDNIIDAIIPVESELSNVPPHTNSPATKIPLRPRKIRKVSPDPTTSESQTEIPKPVNSFPGGKSNGRNNNNKAVQQQQRALALPRIVARSLSYEGEVEMAIRYLRTADPLLSPLIDIHQPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEGGVVPETVLALNPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMEHLCEKWRPYRSVASWYMWRFVEAKGTPSTAVAVATGAGLQQHQMEHHHQQQQQQQHPSQQQLMDPMNSMFNIGAACAWGQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0400 383 MobiDBLite consensus disorder prediction 344 364 - -
Psa5g0400 383 MobiDBLite consensus disorder prediction 1 35 - -
Psa5g0400 383 CDD ENDO3c 162 323 IPR003265 GO:0006284
Psa5g0400 383 SUPERFAMILY DNA-glycosylase 152 323 IPR011257 GO:0003824|GO:0006281
Psa5g0400 383 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 7 377 - -
Psa5g0400 383 Gene3D Hypothetical protein; domain 2 159 272 - -
Psa5g0400 383 SMART endo3end 170 325 IPR003265 GO:0006284
Psa5g0400 383 Pfam HhH-GPD superfamily base excision DNA repair protein 167 310 IPR003265 GO:0006284
Psa5g0400 383 MobiDBLite consensus disorder prediction 74 98 - -
Psa5g0400 383 MobiDBLite consensus disorder prediction 345 364 - -
Psa5g0400 383 Gene3D - 135 322 - -
Psa5g0400 383 MobiDBLite consensus disorder prediction 1 98 - -
Psa5g0400 383 PANTHER BNAC05G15000D PROTEIN 7 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0400 Psa-Chr5 32233568 32239836 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0400 K01247 - gmx:100790760 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0400 5 32233568 32239836 Psa2g3616 2 390694306 390695757 ECH
Psa5g0400 5 32233568 32239836 Psa5g0400 5 32233568 32239836 ECH