Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3621 ATGTCAGAAACTGACATGGCAGTTATTAATCCTGAGATGATGAAGCCTTATGTGTGGCTTCAGACATCCGATGATTCAATCCAACAAGTGGAACAAGAGATTGCGATGTTTTGCCCATTTATATGTCAAGAAATAATACAAAAAAGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCAATGTTGAGCTTAATTCTTGATTATTGTCGATTTCATCAAGTACTAGGCCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAAATTTGTCAGGATAGACACAGAACGGCTCTGTGAGTTGACGTCTGCTGCAGACAGCCTTCAGTTAAAGCCATTGGTTGATCTCACCAGTCGTGCACTAGCTCGAATAATCGAAGGAAGATCACCGGAGGAGATACGCGACATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAATTGGAGCCATTGAGAAACATTACTGACGATCCAAGGATCAGGCTTTTGAATCGCTTGTATGCCAAGAAGAGGAAAGAACTTAAAGAGCGTGAAAGGATAAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAACGATCAGTTGATGACCTTTTATCTTTCATTAATGGAAATGACGGAGATCCGAAGGGGATTAAAACTTCTAAAAATAAAAAGAAGAATCGAAGGAAAAAAGACCAACAGAAGAATTCTTCTTTGAAGGAAGCATCTGTACCAGATAAGAAGGAGGTAAACGGTCATAATATCAGACACCATAGTTTGGAAGCTGATAGACCGTGTGAGACCTCAAATTCACACCATACAGACGATGATCCTATGGTTGAGTTTGATGACGATGATACAGATGATGAGATTGATCCGGTATTAAAGGCAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCCGATTAAATTCCGACTGGCCAGAGAGAATAAAAGACTTTTTGTCGTCAACACAAGAAAGGAAAACAATGCTTTTAACTACCACCAATGGGAACGGTTGTCTAAGGCGACATGCTTGTATGCTTCTTCCATGCATTTCAATATTTTACCTTAACCATCATGTGCTTTCTACCTGA 1101 0.3996 MSETDMAVINPEMMKPYVWLQTSDDSIQQVEQEIAMFCPFICQEIIQKSMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVLGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERIKNVEVEEEHVDERSVDDLLSFINGNDGDPKGIKTSKNKKKNRRKKDQQKNSSLKEASVPDKKEVNGHNIRHHSLEADRPCETSNSHHTDDDPMVEFDDDDTDDEIDPVLKAKIDREVEDFARRLNSDWPERIKDFLSSTQERKTMLLTTTNGNGCLRRHACMLLPCISIFYLNHHVLST* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3621 366 MobiDBLite consensus disorder prediction 235 279 - -
Psa4g3621 366 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Psa4g3621 366 PANTHER SKP1-LIKE PROTEIN 20 1 281 - -
Psa4g3621 366 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Psa4g3621 366 PANTHER SKP1 1 281 IPR016897 GO:0006511
Psa4g3621 366 SMART skp1_3 15 116 IPR001232 GO:0006511
Psa4g3621 366 MobiDBLite consensus disorder prediction 207 279 - -
Psa4g3621 366 Coils Coil 223 243 - -
Psa4g3621 366 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Psa4g3621 366 SUPERFAMILY POZ domain 16 80 IPR011333 -
Psa4g3621 366 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3621 Psa-Chr4 304311770 304316972 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3621 - - gmx:100794666 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3621 4 304311770 304316972 Psa4g3621 4 304311770 304316972 ECH
Psa4g3621 4 304311770 304316972 Psa3g2508 3 212661624 212664950 ECH
Psa3g2508 3 212661624 212664950 Psa4g3621 4 304311770 304316972 PCT