Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2508 ATGTCGGAAATCGACATGTCGGTTATTAAACCAGAGATGATGAAGCCATATATTTGGCTTCAGACTTCGGATGGTTCCATCCAACAGGTGGAACAAGAAATCGCAATGTTTTGCCCTTTCATTTGTCAAGAAATTATACAAAAAGGCGCCGGCTCTTCCAAAAATTGTGCCATATGCCTTCCTGAAAAAGTCACTCCGGCTATGTTGAGTTTAGTTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTCACGATGAAAGATTCATAAGGATGGATACCAAACGGCTCTGTGACTTGACATCTGCCGCAGACAGCCTTCAGTTGAGGCCACTGGTTGATCTTACAAGTCGCACACTTGCAAGAATAATTGAAGGAAAATCTCCTGAGGAGATACGGGAGATATTTCATTTGCCGGATGATCTCACAGAGGAAGAGAAGTTGGAGCCTCTGAAAAACACAACCGATGACCCGAGGATAAGGCTTTTGAACCGGTTGTATGCGAAGAAAAGGAAAGAGCTAAAAGAGCGTGGGAGGTTAAAGAATGCTGAATTAGAAGGAGAGCATGTAGATGAACGCTCGGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGAAGATTCAAAAGGGTCTAAAACTTCTAAGAGTAAAAAGAAGAATAGAAGAAAAAAAGAGCAGAAGAAGAGCTCTCTTTTGACTGAAGCTTCCAAAACGAAAAAGGTTACTTCTTTTCTTGAGTTAAGTGGTCATACTATATCTGATAAAATTGCTGGGACCTCAAATATGCATACAGAAGATGGCACTTTTAATCATAAAGAGTTTGATGATGACGATGACGGAGATGTAGATGATGAGATTGATCCTGCACTACAGGAAAAAATTGATAGGTTGTCAACCTATCACTGTCTTTAG 936 0.4028 MSEIDMSVIKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPFICQEIIQKGAGSSKNCAICLPEKVTPAMLSLVLDYCRFHQVPGRSNKERKSHDERFIRMDTKRLCDLTSAADSLQLRPLVDLTSRTLARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERGRLKNAELEGEHVDERSVDDLLSFINGNDEDSKGSKTSKSKKKNRRKKEQKKSSLLTEASKTKKVTSFLELSGHTISDKIAGTSNMHTEDGTFNHKEFDDDDDGDVDDEIDPALQEKIDRLSTYHCL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2508 311 SMART skp1_3 15 116 IPR001232 GO:0006511
Psa3g2508 311 SUPERFAMILY POZ domain 16 80 IPR011333 -
Psa3g2508 311 Pfam Skp1 family, dimerisation domain 118 154 IPR016072 GO:0006511
Psa3g2508 311 PANTHER SKP1 1 247 IPR016897 GO:0006511
Psa3g2508 311 MobiDBLite consensus disorder prediction 260 291 - -
Psa3g2508 311 SUPERFAMILY Skp1 dimerisation domain-like 91 160 IPR036296 GO:0006511
Psa3g2508 311 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Psa3g2508 311 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Psa3g2508 311 PANTHER SKP1-LIKE PROTEIN 20 1 247 - -
Psa3g2508 311 MobiDBLite consensus disorder prediction 208 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2508 Psa-Chr3 212661624 212664950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2508 - - gmx:100809439 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2508 3 212661624 212664950 Psa3g2508 3 212661624 212664950 ECH
Psa4g3621 4 304311770 304316972 Psa3g2508 3 212661624 212664950 ECH
Psa3g2508 3 212661624 212664950 Psa4g3621 4 304311770 304316972 PCT