Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2350 ATGGTGCTCGAGGCGACGATGATCTGTATTGACAACTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCCCAATCAGACGCTGTAAGTCTCATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACTGTTGGAGTTCTCACTATGGCGGGGAAAGGCGTTCGGGTTTTGGCTACCCCTACTAGTGATTTGGGCAAAATCTTAGCTTGTATGCATGGTCTAGAAATAGGTGGTGAGATGAACCTAGCCGCTGGCATTCAGGTGGCACAGTTGGCTCTTAAGCATAGGCAGAATAAGAAGCAGCAGCAAAGGATTATTGTCTTTTCTGGAAGTCCTGTCAAGTACGAGAAGAAAATGTTGGAAATGATTGGGAGAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAACTTTGGTGAAGATGACGAGGGGAAGACAGAGAAGCTTGAAGCACTCCTTGCAGCGGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACACCTATATTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCTGCTGCAGCAGCAGCATCTGCAGGTGGTGTATCTGGATATGATTTTGGTGTTGATCCAAACTTGGACCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCTAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGTGAACAGCAAGCTGTTTCCCAGGATGCAACTATGACTGAGCAAACCAGTACCGCAGCTTCTGAAGTTGGGACTAAGACAGATGACATGATGGATGATGAGAATGCTCTACTACAACAGGCCCTTGCAATGTCGATGGATGATCCTGCAGCTAGCCATGATGTAAAAGATGCAGATATGTCTGAAGCAGCTACAGATGACCCTGAGTTGGCTAGAGCTTTCCAATTGTCAGTATCAGACCCCCCCAACGACACAGTGGGTAGATTGTTGGCGGACCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCAGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGTCTCAGAAGAAGAATGACGAGGAGCGACCAAATGAGGAGGATAAGAAGTGA 1203 0.4597 MVLEATMICIDNSEWMRNGDYSPSRFQAQSDAVSLICGAKTQSNPENTVGVLTMAGKGVRVLATPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFSGSPVKYEKKMLEMIGRKLKKNSVALDIVNFGEDDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQAVSQDATMTEQTSTAASEVGTKTDDMMDDENALLQQALAMSMDDPAASHDVKDADMSEAATDDPELARAFQLSVSDPPNDTVGRLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSESQKKNDEERPNEEDKK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2350 400 Pfam Ubiquitin interaction motif 324 338 IPR003903 -
Psa4g2350 400 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Psa4g2350 400 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Psa4g2350 400 MobiDBLite consensus disorder prediction 306 340 - -
Psa4g2350 400 MobiDBLite consensus disorder prediction 363 400 - -
Psa4g2350 400 MobiDBLite consensus disorder prediction 309 325 - -
Psa4g2350 400 MobiDBLite consensus disorder prediction 242 288 - -
Psa4g2350 400 MobiDBLite consensus disorder prediction 259 283 - -
Psa4g2350 400 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 400 - -
Psa4g2350 400 SMART VWA_4 2 175 IPR002035 -
Psa4g2350 400 MobiDBLite consensus disorder prediction 242 258 - -
Psa4g2350 400 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Psa4g2350 400 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 292 311 IPR003903 -
Psa4g2350 400 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 400 - -
Psa4g2350 400 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Psa4g2350 400 Coils Coil 232 252 - -
Psa4g2350 400 SUPERFAMILY vWA-like 4 175 IPR036465 -
Psa4g2350 400 SMART uim 222 241 IPR003903 -
Psa4g2350 400 SMART uim 292 311 IPR003903 -
Psa4g2350 400 SMART uim 324 343 IPR003903 -
Psa4g2350 400 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Psa4g2350 400 MobiDBLite consensus disorder prediction 385 400 - -
Psa4g2350 400 Gene3D - 220 311 - -
Psa4g2350 400 CDD VWA_26S_proteasome_subunit 1 188 - -
Psa4g2350 400 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2350 Psa-Chr4 190004156 190008874 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2350 K03029 - gmx:100814594 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2350 4 190004156 190008874 Psa4g2350 4 190004156 190008874 ECH
Psa2g3485 2 383624444 383628861 Psa4g2350 4 190004156 190008874 PCT