Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3485 ATGGTGCTCGAGGCGACAATGATCTGTATAGACAATTCTGAATGGATGCGAAACGGGGATTATTCTCCTTCTCGATTTCAAGCTCAAGCTGATGCTGTTAATCTCATCTGCGGTGCTAAAACCCAGTCTAATCCGGAAAATACTGTGGGAGTTCTTATAATGGCAGGGAAAGGTGTTCGTGTTTTGGTTACCCCTACCAGTGATCTAGGCAAGATCTTAGCATGTATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAATTGGCTCTAAAGCACCGTCAAAATAAAAAGCAACAGCAAAGGATTATTGTCTTTGCTGGAAGTCCGGTCAACCATGAAAAGAAAATGTTGGAGATAATAGGGAGAAAGTTGAAAAAGAATAGTGTAGCGCTTGATATTGTTAATTTTGGTGAAGTAGATGAGGCAAAGACCGAGAAGTTGGATTCACTTCTTGCAGCTGTGAACAATAATGATTCAAGCCATATTGTTCATGTTCCAGCTGGTGCAAATGCACTTTCTGATGTACTTATAAGTACACCAATTTTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCTGCTGCTGCAGCGGCAGCTGCAGCTGGGGGTGGATCTGGATATGATTTTGGTGTGGATCCAAACTTGGATCCTGAATTGGCTCTTGCCTTAAGAGTTTCAATGGAAGAGGAAAGAGCCAGGCAGGAAGCAGCGGCAAAAAAGGCTGCAGAGGATGCTGCCAAACAAGAGAAAGGAGGCGAGCAGCAAGCTGGCTCTCAAGATGCGACAATGACCGAGCGCGCCAGTGCATCAACTTCTGAAGCAGAGAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTGCAGCAGGCGCTTGCAATGTCAATGGATGAACCCGCAGTTGGCCATGATGTAAAAGATACAGATATGTCAGAAGCATCTGTCGATGACCCAGATCTGGCACTAGCTCTCCAATTGTCAGTAGCAGATAGTACAAAAGATCAAGCAAGCCAGTCAGATATGACTAAATTGTTGGCAGATCAATCCTTTGTATCTTCTGTTCTTGCATCGCTTCCCGGGGTCGATCCAAACGACCCTTCCGTCAAAGATTTGTTGGCATCCATGCAAAATCAATCTGAGCAGCAGAAAAAGGATGACAATCCATCAAATGAGGAGAAGAAATAA 1212 0.4455 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLIMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVNHEKKMLEIIGRKLKKNSVALDIVNFGEVDEAKTEKLDSLLAAVNNNDSSHIVHVPAGANALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGGSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGEQQAGSQDATMTERASASTSEAENKTTDLMDDENALLQQALAMSMDEPAVGHDVKDTDMSEASVDDPDLALALQLSVADSTKDQASQSDMTKLLADQSFVSSVLASLPGVDPNDPSVKDLLASMQNQSEQQKKDDNPSNEEKK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3485 403 SMART uim 292 311 IPR003903 -
Psa2g3485 403 SMART uim 324 343 IPR003903 -
Psa2g3485 403 SMART uim 222 241 IPR003903 -
Psa2g3485 403 Gene3D - 220 306 - -
Psa2g3485 403 MobiDBLite consensus disorder prediction 242 288 - -
Psa2g3485 403 MobiDBLite consensus disorder prediction 242 258 - -
Psa2g3485 403 SMART VWA_4 2 175 IPR002035 -
Psa2g3485 403 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Psa2g3485 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 402 - -
Psa2g3485 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 402 - -
Psa2g3485 403 Coils Coil 232 257 - -
Psa2g3485 403 MobiDBLite consensus disorder prediction 260 284 - -
Psa2g3485 403 MobiDBLite consensus disorder prediction 366 403 - -
Psa2g3485 403 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Psa2g3485 403 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Psa2g3485 403 Pfam Ubiquitin interaction motif 325 339 IPR003903 -
Psa2g3485 403 Coils Coil 399 403 - -
Psa2g3485 403 SUPERFAMILY vWA-like 4 173 IPR036465 -
Psa2g3485 403 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Psa2g3485 403 CDD VWA_26S_proteasome_subunit 1 188 - -
Psa2g3485 403 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Psa2g3485 403 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3485 Psa-Chr2 383624444 383628861 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3485 K03029 - gmx:100814594 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3485 2 383624444 383628861 Psa2g3485 2 383624444 383628861 ECH
Psa2g3485 2 383624444 383628861 Psa4g2350 4 190004156 190008874 PCT