Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2129 ATGAGTGCTGTGAATCTTAACACATGGACACACTCCAATTTCATGTTCAATCAAGTTACTGCTACCAGATTCAGATCCAGATCCACATCTTTCTATTTTACAAAAATACCCTCAACCGTTAAACCACAAACTCATAACCAATTCATGAACTCTTCTTTTTCGTTTTCCGTTTCAGCTTTGCTCACTAAACAAGAAACAATTGAAGCCGAAGAGAAACCAGTTTTCGATTTCAAATCTTACATGATTGAGAAAGCAACTAGGGTTAACAAAGCCCTAGACGACGCCGTTTCGTTACGGGAGCCTCTCAAAGTTCACGACGCTATGCGATACTCTCTCCTCGCCGGCGGGAAGCGCGTCCGCCCGGTTCTCTGTTTAGCCGCTTGTGAACTCGTCGGAGGCACCGAATCCATGTCGATGCCGGCCGCGTGCGCCGTTGAAATGATTCACACTATGTCGCTTATCCACGACGACCTTCCGTGTATGGATAACGACGATCTCCGGCGAGGAAAACCGACGAATCACAAAGTCTACGGAGAAGACGTCGCGGTTCTCGCCGGAGACGCTTTACTCGCTTTCGCCTTCGAGCATATTGCGGTGTCTACATCCGGCGTTTCTCCGGCGAGAATCGTCCGCGCAATCGGAGAGCTAGCGAAGTCGATCGGCTCCGAAGGACTTGTTGCCGGTCAAGTCGTCGATATAAACTCGGAAGGTTTATCCGACGTGGGAATAGATAGGCTCGAGTTCATTCACCTTCATAAAACCGCTGCTTTGTTAGAAGGTTCTGTTGTTCTCGGTGCGATTCTTGGTGGTGGTTGTGATGAAGATGTTGAAAAACTGAGAAAATTTGCTAGATATATAGGGTTATTGTTTCAGGTTGTTGATGATATTCTTGATGTGACGAAATCTTCACAGGAATTAGGTAAAACTGCTGGGAAAGATTTGGTGGCTGATAAGGTTACTTATCCAAAGCTTTTGGGGATTGAAAAATCTAAAGAATTTGCTGAGAAATTGAACCGTGATGCACAGGATCAACTTTCTGGGTTTGATTCTCGTAAATCTGCTCCTTTGATTGCTTTGGCTAATTACATTGCTTATAGGCAAAACTAA 1107 0.4526 MSAVNLNTWTHSNFMFNQVTATRFRSRSTSFYFTKIPSTVKPQTHNQFMNSSFSFSVSALLTKQETIEAEEKPVFDFKSYMIEKATRVNKALDDAVSLREPLKVHDAMRYSLLAGGKRVRPVLCLAACELVGGTESMSMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLAFAFEHIAVSTSGVSPARIVRAIGELAKSIGSEGLVAGQVVDINSEGLSDVGIDRLEFIHLHKTAALLEGSVVLGAILGGGCDEDVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQDQLSGFDSRKSAPLIALANYIAYRQN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2129 368 SFLD Polyprenyl Transferase Like 80 366 - -
Psa4g2129 368 Pfam Polyprenyl synthetase 105 337 IPR000092 GO:0008299
Psa4g2129 368 ProSitePatterns Polyprenyl synthases signature 1. 153 169 IPR033749 -
Psa4g2129 368 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 12 368 - -
Psa4g2129 368 ProSitePatterns Polyprenyl synthases signature 2. 286 298 IPR033749 -
Psa4g2129 368 Gene3D Farnesyl Diphosphate Synthase 74 368 IPR008949 -
Psa4g2129 368 CDD Trans_IPPS_HT 104 366 IPR000092 GO:0008299
Psa4g2129 368 SFLD Isoprenoid Synthase Type I 80 366 - -
Psa4g2129 368 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 12 368 - -
Psa4g2129 368 SUPERFAMILY Terpenoid synthases 77 351 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2129 Psa-Chr4 169205814 169208917 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2129 K13789 - gmx:100785539 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2129 4 169205814 169208917 Psa4g2129 4 169205814 169208917 ECH
Psa2g3690 2 395323090 395324593 Psa4g2129 4 169205814 169208917 ECH
Psa2g3690 2 395323090 395324593 Psa4g2129 4 169205814 169208917 PCT